Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1161
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 122 4e-29
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 84 2e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 81 1e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 60 3e-10
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 28 0.90
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.6
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 2.7
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.7
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 26 3.6
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 4.8
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 4.8
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 6.3
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 25 6.3
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 8.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 122 bits (294), Expect = 4e-29
Identities = 56/82 (68%), Positives = 66/82 (80%)
Frame = +2
Query: 257 EASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 436
EA+GGKYVPRAV+VDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL
Sbjct: 53 EAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAEL 112
Query: 437 VDSGTGCS*KRSRKAAIXLQGF 502
D+ +R +A LQGF
Sbjct: 113 ADAVLDVV-RREAEACDALQGF 133
Score = 94.3 bits (224), Expect = 1e-20
Identities = 58/140 (41%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Frame = +3
Query: 102 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYTKLQGAS-T 278
MREIVHIQAGQCGNQ+GA FW I+DEHG+D+ G Y G S+ Q ER+NVY+ + G
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 279 SREL*WWTLSLEPWTPSV--PGRXXXXXXXXXXXXXXXXXGITGRKDITQRGLNWLIPVL 452
R + + LEP T G+ G K G VL
Sbjct: 61 PRAV---LVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117
Query: 453 DVVRKEAERLRLXCRGFQAT 512
DVVR+EAE +GFQ T
Sbjct: 118 DVVRREAEACD-ALQGFQLT 136
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 83.8 bits (198), Expect = 2e-17
Identities = 39/82 (47%), Positives = 51/82 (62%)
Frame = +2
Query: 257 EASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 436
E GKYVPR++ VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G EL
Sbjct: 55 ETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114
Query: 437 VDSGTGCS*KRSRKAAIXLQGF 502
VD T +R LQGF
Sbjct: 115 VDEVTD-KIRRIADNCSGLQGF 135
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +3
Query: 102 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 203
MREI+ I GQ G QIG WE+ EHGI G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 81.0 bits (191), Expect = 1e-16
Identities = 32/63 (50%), Positives = 45/63 (71%)
Frame = +2
Query: 257 EASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 436
E GK+VPR++ VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E+
Sbjct: 59 ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118
Query: 437 VDS 445
+DS
Sbjct: 119 IDS 121
Score = 38.7 bits (86), Expect = 6e-04
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 102 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 227
MRE++ + GQ G QIG WE+ EHGI G + +S++
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEV 42
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 59.7 bits (138), Expect = 3e-10
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Frame = +2
Query: 254 YEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEG 427
Y++ +Y+PRA+++DLEP ++++ S +G ++ P+N + ++ GAGNNWA G+
Sbjct: 53 YQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGY--SH 110
Query: 428 AELVDSGTGCS*KRSRKAAIXLQGFSSYSILLG 526
AE + R + L+GFS + G
Sbjct: 111 AERIFEDIMDMIDREADGSDSLEGFSLLHSIAG 143
Score = 53.2 bits (122), Expect = 3e-08
Identities = 22/50 (44%), Positives = 34/50 (68%)
Frame = +3
Query: 105 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYY 254
REI+ +QAGQCGNQIG++FW+ + EHGI G + ++R +V++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFF 52
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 28.3 bits (60), Expect = 0.90
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 393 PAPDCPKTKLSGRKICPNGPERTESMVPGSRS 298
P+ PK L R I PNGPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = +1
Query: 97 QS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPTCSLNASMSTIRSFRGQV 276
+S S +S ++ +S SS S++S++ + ++A+P+ S ++S + SF
Sbjct: 171 KSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITST 230
Query: 277 RPAS 288
PAS
Sbjct: 231 TPAS 234
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.6 bits (56), Expect = 2.7
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 5/129 (3%)
Frame = -3
Query: 470 FFSNYIQYRNQPVQPPLCNV-----LSPSYSPPQTVRRRSCPVGRFAQTARNGRSPWFQA 306
+ +N + QP QPP+ V L P+ T R + P F + S
Sbjct: 497 YLTNKARNATQPTQPPVSQVDYSNNLPPNLDTSSTFRSSASPPSAFTKAGNEALS--VPL 554
Query: 305 QGPPSQLAGRTCPLKLRIVDIDAFKLQVGVAAVSTRGVNAVLVRDYFPELCSDLIPALTR 126
G + A R P L + A +Q + T G + R EL ++ +L R
Sbjct: 555 SGARNTAASR--PTNLAAGNSSASIVQQLLECGGTMGQQKMTSR--IRELTERVMHSLMR 610
Query: 125 LDVDDFPHD 99
D PHD
Sbjct: 611 PVPLDLPHD 619
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 335 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 436
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 170 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 66
+F E+ + P +LD+DD + + P E+N
Sbjct: 36 FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 67 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 225
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 67 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 225
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 6.3
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -1
Query: 127 AWMWTISLMIALKIWNPPNRI 65
AW+W ++LM+ + PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 443 NQPVQPPLCNVLSPSYSPPQT 381
N+P +PP+ N + PPQT
Sbjct: 86 NEPAKPPIPNAATKPTFPPQT 106
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 413 HYTEGAELVDSGTGCS*KRSRKAAIXLQGFSSYSILLGRRYWIWYWGTLLIFQNPVKSI 589
+ GA+L + TGCS + +R+ + + I + W + T + Q KSI
Sbjct: 456 YVASGAQLTQTVTGCSQQVARRMGLPVLPLVCVFIRTSMQTWSMFRSTHSMKQEIAKSI 514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,505
Number of Sequences: 5004
Number of extensions: 52832
Number of successful extensions: 164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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