Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1157
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 33 0.096
08_02_0602 + 19183549-19184919 31 0.68
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 31 0.68
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 30 0.90
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405... 29 1.6
03_06_0765 + 36104604-36105689 29 2.1
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 29 2.7
05_04_0062 + 17607290-17608852 28 3.6
03_02_0187 - 6248226-6249226,6249296-6250148 28 3.6
12_02_0092 + 13520046-13520924 28 4.8
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 28 4.8
04_04_0658 + 27006245-27006305,27006447-27006523,27006798-270072... 28 4.8
10_06_0146 + 11230357-11230364,11230847-11230893,11231535-112316... 27 6.3
08_01_0263 + 2141679-2141835,2142033-2142448 27 6.3
06_03_0842 + 25307509-25308049,25308507-25308659,25308770-253089... 27 6.3
12_02_0077 - 13288916-13289659,13289689-13289691 27 8.4
04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345 27 8.4
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 27 8.4
01_01_0070 - 542603-542686,542803-543441 27 8.4
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 33.5 bits (73), Expect = 0.096
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 228 GHGQPGRLCSQASAVAQTVGIIAHLSAGIPG 320
G GR S+ + V +T+G+++ +S+G+PG
Sbjct: 97 GRAPAGRAASKGAGVGETLGVVSRVSSGVPG 127
>08_02_0602 + 19183549-19184919
Length = 456
Score = 30.7 bits (66), Expect = 0.68
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 249 LCSQASAVAQTVGIIAHLSAGIPGDACAAANVINS 353
+C QA+A + + A L AG+ DACA +V +S
Sbjct: 189 MCRQAAAAGASGSVAAALPAGVLDDACADLDVTSS 223
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.7 bits (66), Expect = 0.68
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 274 PKPSELSPIYLPVSPV-MPVQPLTSLTL-TQTASGPETSPASDNLSVPSSDTWDKT 435
P S SP+Y P SP P P S T + + + P SP S + S P+S ++ T
Sbjct: 1639 PSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPT 1693
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 274 PKPSELSPIYLPVSPV-MPVQPLTSLTL-TQTASGPETSPASDNLSVPSSDTWDKT 435
P S SP Y P SPV P P S T + + P SP S + S P+S ++ T
Sbjct: 1632 PSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS-PTSPSYSPT 1686
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 30.3 bits (65), Expect = 0.90
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 40 FLVLLVATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWD 171
FL+LL+ +A AAP ++I Y+ R +++G + A+D
Sbjct: 10 FLLLLIVGAATAAPDMSIISYNAEHGARGLEEGPTEAEARAAYD 53
>06_03_0649 +
23138442-23138842,23139576-23139849,23139929-23140562,
23140771-23140826,23141178-23141282,23141295-23141535,
23142686-23142690
Length = 571
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 274 PKPSELSPIYLPVSP-VMPVQPLTSLTL-TQTASGPE 378
P+P + SPI++P SP P P +SL T TA P+
Sbjct: 69 PRPPQSSPIFVPDSPNPSPAAPTSSLASGTSTARPPQ 105
>03_06_0765 + 36104604-36105689
Length = 361
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 219 DLEGHGQPGRLCSQASAVAQTVGIIAHLSAGIPGD 323
DL+ G L Q A AQ VG ++ GIPG+
Sbjct: 59 DLQADVDRGHLVGQVRAAAQCVGFFQVVNHGIPGE 93
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 488 DQSIGVDQG*DELIDKIQVLSHVSEEGTERLSEAGEVSG 372
D + G D + K V HVSE T+R S G+ +G
Sbjct: 489 DDENDTENGLDTNMHKTDVCQHVSEISTQRCSSKGKTAG 527
>05_04_0062 + 17607290-17608852
Length = 520
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +2
Query: 134 MEKLVP*SHVHGTTSMTLTKASPSSTFKRS*RTWPARAIMQSSISGGPNRRNYRP 298
+EK+ S V G + + AS SS+ RS R+ + M S+ SGGP+ Y P
Sbjct: 29 LEKIRSLSVVSGEVAGWSSSASASSS--RSARSSYYSSSMSSNASGGPHNHRYAP 81
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +1
Query: 253 AVKHQRWPKPSEL---SPIYLPVSPVMPVQPLTS 345
A K Q WPKP+ + S +Y P+SP V+ + S
Sbjct: 43 AQKVQVWPKPTSISWPSAVYAPLSPSFSVRAVLS 76
>12_02_0092 + 13520046-13520924
Length = 292
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 277 KPSELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPAS 393
K S SP +P+ PV+P+ + T S T P+S
Sbjct: 113 KASASSPTKVPILPVVPILTIMDTPSLNTTSSLATGPSS 151
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 201 GDAFVSVIDVVPCT*DYGTSFS 136
G F SV+D VPC DY FS
Sbjct: 107 GTGFYSVVDAVPCRRDYLKMFS 128
>04_04_0658 +
27006245-27006305,27006447-27006523,27006798-27007225,
27007614-27007882,27007966-27008249
Length = 372
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 294 AHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQSLGPFF 416
+ G+PG +C+ A +N+ ++G + AG +++ P F
Sbjct: 168 SRFGVGVPGYSCSNATKVNATSEGEKPELPAGDGEAVAPVF 208
>10_06_0146 +
11230357-11230364,11230847-11230893,11231535-11231642,
11231789-11231828,11231995-11232757
Length = 321
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -3
Query: 419 SEEGTERLSEAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSDGLGHR*CLTA*SP 243
S++ +++L +GE++ ND ++ + DNS+G HR C P
Sbjct: 213 SQQQSQQLGISGEINSETNASNEDNDEQATQSVSFQQDQSQEDNSNGREHRVCFNCYEP 271
>08_01_0263 + 2141679-2141835,2142033-2142448
Length = 190
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +3
Query: 219 DLEGHGQPGRLCSQASA---VAQTVGIIAHLSA-GIPGDACAAANVINSYT 359
D +G+G PG +C S+ + T G++++ SA G G A A ++ + T
Sbjct: 131 DGDGNGTPGGICIDGSSPPTIISTPGVVSYGSAPGSSGSATTALAIMAAAT 181
>06_03_0842 +
25307509-25308049,25308507-25308659,25308770-25308973,
25309056-25309521,25309614-25309746
Length = 498
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 225 EGHGQPGRLCSQASAVAQTVGIIAHLSAGIPGDACAAANVINSYTDGVRSGNF 383
E +GQ GR+ QAS V +G++ + I GD + + + G+ G F
Sbjct: 151 EAYGQWGRIALQASVVINNIGVMI-VYMIIIGDVLSGTSSTGVHHRGILEGWF 202
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = -3
Query: 416 EEGTERLSEAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSDGLGHR*CLTA*SP 243
+E +++L +GE++ ND ++ + DNS+G HR C P
Sbjct: 141 QEQSQQLGISGEINSDTNASNEDNDEQATQSVSFQQDQSQEDNSNGREHRVCFNCYEP 198
>04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345
Length = 347
Score = 27.1 bits (57), Expect = 8.4
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +3
Query: 222 LEGHGQPGRLCSQASAVAQTVGIIAHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQS 401
L+ G L + A+A Q + + H PGD + A + + R+GN AG Q
Sbjct: 85 LDADESAGALMAAAAAQQQRMVLPPH-GLVFPGDVQSRAVGCGAASTSGRAGNAAGLSQG 143
Query: 402 LGPFFGHVGQNLNLINQL 455
L H G ++ + +L
Sbjct: 144 LLSQLYHQGVEIDALVRL 161
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 106 DNEIPRDIDDGKASSVISRAWDYVDDTDK--SIAILNVQEILKDMA 237
+N P D+ +G + +I+R V +TD+ ++ + +I++D+A
Sbjct: 459 ENNTPEDVAEGNLNELINRNMLEVVETDELGRVSTCKMHDIMRDLA 504
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/59 (27%), Positives = 22/59 (37%)
Frame = +1
Query: 235 ASQGDYAVKHQRWPKPSELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVP 411
A+Q A Q P P +P P +P P T A P +PA ++ P
Sbjct: 25 AAQSPAAAPAQPTPTPVPTAPAKSPPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPP 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,000,940
Number of Sequences: 37544
Number of extensions: 303627
Number of successful extensions: 1076
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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