Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1157
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47241| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7) 30 0.92
SB_54110| Best HMM Match : Hexapep (HMM E-Value=9.8e-14) 30 1.2
SB_37123| Best HMM Match : Extensin_2 (HMM E-Value=1.5) 30 1.2
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 2.1
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_38050| Best HMM Match : Hexapep (HMM E-Value=0.04) 28 4.9
SB_34483| Best HMM Match : Hexapep (HMM E-Value=0.0027) 28 4.9
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 4.9
SB_51925| Best HMM Match : DIX (HMM E-Value=0.75) 28 4.9
SB_36300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 28 4.9
SB_18557| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 28 4.9
SB_58977| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0) 27 6.5
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_997| Best HMM Match : Hexapep (HMM E-Value=6.8e-15) 27 8.6
>SB_47241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 30.7 bits (66), Expect = 0.70
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +1
Query: 106 DNEIPRDIDDGK----ASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYAVKHQRW 273
D + +D DD A+ V++ DY DD D ++NV+ +L AS Y KH
Sbjct: 49 DYDEVKDNDDNNVGDLANGVVADENDYDDDCDNYDYLINVEGLLYMNASLWKYMEKH--- 105
Query: 274 PKPSELSPIYLPVSPVMPVQPLTSLTLTQTASGP 375
K + S + +S ++ + P +T Q P
Sbjct: 106 -KVKQDSKAFQLLSKLLVMDPNKRITSEQALQDP 138
>SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)
Length = 576
Score = 30.3 bits (65), Expect = 0.92
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Frame = +1
Query: 106 DNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILN------VQEILKDMASQGDYAVKHQ 267
D EI R+ D A SV + VD +D S I+ Q L S G Y Q
Sbjct: 80 DTEINREYDFSGAKSVKKTSITLVDYSDGSNKIVENTKTDLPQSGLLGKISSGSYVGGRQ 139
Query: 268 RWPKPSELSPIYLPVSPVMPVQP 336
P PS SP + PV P
Sbjct: 140 ALPPPSRWSPHITHKNETQPVGP 162
>SB_54110| Best HMM Match : Hexapep (HMM E-Value=9.8e-14)
Length = 729
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 264 MLDCIIALAGHVLQDLLNVEDGDAFVSVIDVV 169
+LD + + G L D ++VEDGDA + +DVV
Sbjct: 125 LLDDVDVVDGATLLDDVDVEDGDAMLDDVDVV 156
>SB_37123| Best HMM Match : Extensin_2 (HMM E-Value=1.5)
Length = 318
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 313 SPVMPVQPLTSLTLTQTA--SGPETSPASDNLSVPSSDTWDKT 435
SP+ Q +S LTQT S + DNLS P + TWD +
Sbjct: 178 SPLTQTQDNSSSPLTQTQDISSSPLNQTWDNLSCPLTQTWDNS 220
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 313 SPVMPVQPLTSLTLTQT---ASGPETSPASDNLSVPSSDTWDKT 435
SP+ +S LTQT +S P T DNLS P + TWD +
Sbjct: 35 SPLTQTWDNSSSPLTQTWDNSSSPLTQ-TWDNLSSPLTQTWDNS 77
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 55 VATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI 222
V++ AY A VTI +YSD I++ + S W+ DD ++ LN+ ++
Sbjct: 2786 VSSKAYGA-RVTIGKYSDRAGKAAIENVEFSLCGQEGWNDWDDPRYALTYLNLDDV 2840
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 310 VSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 417
V+P T + +T+TA+GPET+ AS+ P +
Sbjct: 1370 VAPKSTTLASTVVPITETAAGPETTLASETTMAPKT 1405
>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +1
Query: 214 QEILKDMASQGDYAVKHQRWPKPSELSP--IYLPVSPVMPVQPLTSLTL-TQTASG-PET 381
+++LK + + KH RW E P Y+ + + P T ++ +QT +G P+T
Sbjct: 64 EQVLKPCKGRTTWGAKHDRWDSSQETDPGASYILLWDIHPAGEFTRFSIQSQTTAGRPKT 123
>SB_38050| Best HMM Match : Hexapep (HMM E-Value=0.04)
Length = 324
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 276 GPPLMLDCIIALAGHVLQDLLNVEDGDAFVSVIDVV 169
G PL LD + + G L D +NV DGD + +DVV
Sbjct: 147 GDPL-LDDVDVVDGVTLLDDVNVVDGDPLLDDVDVV 181
>SB_34483| Best HMM Match : Hexapep (HMM E-Value=0.0027)
Length = 323
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 276 GPPLMLDCIIALAGHVLQDLLNVEDGDAFVSVIDVV 169
G PL LD + + G L D +NV DGD + +DVV
Sbjct: 146 GDPL-LDDVDVVDGVTLLDDVNVVDGDPLLDDVDVV 180
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 274 PKPSELSPIYLPVSPV-MPVQP-LTSLTLTQTASGPETSPASDNLSV-PSSDTWDKT 435
P P+ SP Y P SP MP P ++ + + + + P SP+S + P+S ++ T
Sbjct: 403 PSPAAASPGYSPSSPAFMPSSPSMSPASPSYSPTSPGYSPSSPSSGYSPASPSYSPT 459
>SB_51925| Best HMM Match : DIX (HMM E-Value=0.75)
Length = 256
Score = 27.9 bits (59), Expect = 4.9
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +1
Query: 178 DDTDKSIAI---LNVQEILKDMASQGDYAVKHQRWPK-PSELSPIYLPVSPVMPVQPLTS 345
+DT ++A+ N QE+++ A + + A + PSE+SPI S V P++ S
Sbjct: 146 EDTPANVAMDVEENQQEVVRKKAEESESASESTATEATPSEVSPIETTPSEVSPIKTTPS 205
Query: 346 LTLTQTASGPETSP 387
+ E SP
Sbjct: 206 EVSPIETTPSEVSP 219
>SB_36300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 82 SVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQE-ILKDMASQGD 249
+VT +SD + + D KA+++ S YV++ + N+QE IL D ++G+
Sbjct: 15 AVTSVDFSDPQGGKGACDRKAATIKSHIRQYVNEGHDVVTAANLQEAILADGGARGE 71
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 265 QRWPKPSELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTW 426
QR K S +S Y PV+P+ +S+ ET S +V S W
Sbjct: 580 QRNAKLSAVSDFYRPVTPIKRSPSTSSVNSEGECKSSETERKSSGFNVASKALW 633
>SB_18557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 346 LTLTQTASGPETSPASDNLSVPSSDTWDKT 435
LT T+ S P + DNLS P + TWD +
Sbjct: 67 LTRTRDNSIPPLTQTWDNLSSPLTQTWDNS 96
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 313 SPVMPVQPLTSLTLTQT---ASGPETSPASDNLSVPSSDTWDKT 435
SP+ + +S LTQT +S P T DN S P + TWD +
Sbjct: 98 SPLTQTRENSSSLLTQTRDNSSSPLTQ-TQDNSSSPLTQTWDNS 140
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 184 CHR-RSPMHVRLRN*LFHHQCRVEFHYH 104
CHR R H+RL L +H+ R+ H+H
Sbjct: 440 CHRPRLSNHLRLSRHLHYHRRRLSIHHH 467
>SB_58977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 440 IQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 333
I+ ++ + E ++L + + S P+A+CVR+ SG
Sbjct: 97 IKSIARLRVEKQDQLPDEPDASNPEALCVRIKLASG 132
>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
Length = 1182
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +3
Query: 270 VAQTVGIIAHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQSLGPF 413
VAQ G IA LSA G+A +IN + V S N Q +G F
Sbjct: 364 VAQLAGSIAELSAYHHGEASLMGTIINLAENFVGSNNI-NLLQPVGQF 410
>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1706
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 259 KHQRWPKPSELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNL 402
KH + P PS I PVSP P +P S + P P S L
Sbjct: 326 KHVQLPDPSSSKDIEEPVSPAPPKKPRRSPS-KPAIPAPAYKPRSSRL 372
>SB_997| Best HMM Match : Hexapep (HMM E-Value=6.8e-15)
Length = 916
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 276 GPPLMLDCIIALAGHVLQDLLNVEDGDAFVSVIDVV 169
G PL LD + + G L D ++V DGD + +DVV
Sbjct: 450 GDPL-LDDVDVVDGDTLLDDVDVVDGDTLLDDVDVV 484
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,793,766
Number of Sequences: 59808
Number of extensions: 324441
Number of successful extensions: 1585
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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