Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1157
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45330.1 68416.m04894 lectin protein kinase family protein co...    39   0.002
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    33   0.11 
At3g20310.1 68416.m02573 ethylene-responsive element-binding fam...    29   1.7  
At5g66640.1 68418.m08399 LIM domain-containing protein-related c...    28   3.0  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    28   3.0  
At3g12200.1 68416.m01521 protein kinase family protein contains ...    28   4.0  
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family...    27   5.3  
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    27   5.3  
At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putat...    27   5.3  
At3g23510.1 68416.m02960 cyclopropane fatty acid synthase, putat...    27   5.3  
At1g04150.1 68414.m00405 C2 domain-containing protein contains I...    27   5.3  
At1g01920.1 68414.m00110 SET domain-containing protein low simil...    27   5.3  
At2g39220.1 68415.m04817 patatin family protein similar to patat...    27   9.3  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   9.3  
At2g26180.1 68415.m03144 calmodulin-binding family protein low s...    27   9.3  
At1g78710.1 68414.m09174 expressed protein similar to hypothetic...    27   9.3  

>At3g45330.1 68416.m04894 lectin protein kinase family protein
           contains Serine/Threonine protein kinases active-site
           signature, Prosite:PS00108; contains Pfam profiles
           PF00069: Protein kinase domain, PF00139: Legume lectins
           beta domain, PF00138: Legume lectins alpha domain
          Length = 682

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +1

Query: 211 VQEILKDMASQGDYAVKHQRWPKPSELSP---IYLPVSPVMPVQPLTSLTLTQTASGPET 381
           + E   +M     Y  +HQR P+ S  +P   +  PV   +P   +TS ++T + SGP  
Sbjct: 602 IPEARPNMEQVVQYINRHQRLPEFSPNTPGIGVSTPVLMGLPSLAITSSSVTSSVSGPSA 661

Query: 382 SPASDNLSVPSSDT 423
           SP+S N S+  S T
Sbjct: 662 SPSSANNSMFISHT 675


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 292 SPIYLPV-SPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSS*PW 468
           SPI  P  SP  P  P TS T +   + P T+PA    +  SS          ++ S P 
Sbjct: 23  SPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVSESSPP 82

Query: 469 STPILWSDQP 498
            TP+  S  P
Sbjct: 83  PTPVPESSPP 92


>At3g20310.1 68416.m02573 ethylene-responsive element-binding family
           protein similar to SP|O80339 Ethylene responsive element
           binding factor 3 (AtERF3) {Arabidopsis thaliana};
           contains Pfam profile PF00847: AP2 domain
          Length = 244

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 23/66 (34%), Positives = 27/66 (40%)
 Frame = +1

Query: 178 DDTDKSIAILNVQEILKDMASQGDYAVKHQRWPKPSELSPIYLPVSPVMPVQPLTSLTLT 357
           D   KS   L   +   D A   D A ++ R PK     PI    SP  P+QPLT L   
Sbjct: 44  DPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPI--DCSPSSPLQPLTYLHNQ 101

Query: 358 QTASGP 375
              S P
Sbjct: 102 NLCSPP 107


>At5g66640.1 68418.m08399 LIM domain-containing protein-related
           contains low similarity to Pfam profile PF00412: LIM
           domain
          Length = 450

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -1

Query: 199 RCFC--QCHRRSPMHVRLRN*LFHHQCRVEFH 110
           RC C   CHR   MH  L+   FH  C  E++
Sbjct: 95  RCLCCFHCHRPFVMHEILKKGKFHIDCYKEYY 126


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = +1

Query: 274 PKPSELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSIN 453
           P P  LSP   P  P     PL+SL+ + + S P +SP+S   + PSS +      LS++
Sbjct: 58  PPPLSLSPSSPPPPPPSS-SPLSSLSPSLSPSPPSSSPSS---APPSSLSPSSPPPLSLS 113

Query: 454 SS*PWSTP 477
            S P   P
Sbjct: 114 PSSPPPPP 121


>At3g12200.1 68416.m01521 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 571

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 289 LSPIYLPVSPVMPV 330
           LSPIYLPV P+ PV
Sbjct: 283 LSPIYLPVFPIKPV 296


>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
           protein
          Length = 1332

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 481 VSELTRVKTS*LIRFKFCPTCPKKGPRDCL-KPAKFPDL 368
           V E   VKT   ++F  C  CPK   R CL +   F D+
Sbjct: 353 VCENGEVKTDSNLQFAVCRRCPKSYHRKCLPREISFEDI 391


>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 145 SSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYAVKH 264
           S+V  +A   VD+     A ++V  + KDM   GD+   H
Sbjct: 328 SNVFHKACIEVDEEGTEAAAVSVASMTKDMLLMGDFVADH 367


>At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putative
           / CPA-FA synthase, putative similar to cyclopropane
           synthase [Sterculia foetida] GI:21069167; contains Pfam
           profiles PF02353: Cyclopropane-fatty-acyl-phospholipid
           synthase, PF01593: amine oxidase, flavin-containing
          Length = 867

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 100 YSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGD 249
           YSD  +  DID    +     AW+++  T+K + +     IL+++    +
Sbjct: 297 YSDIYLHHDIDLMPRNQAAWSAWNFLGSTEKKVCVTYWLNILQNLGENSE 346


>At3g23510.1 68416.m02960 cyclopropane fatty acid synthase, putative
           / CPA-FA synthase, putative similar to cyclopropane
           synthase [Sterculia foetida] GI:21069167; contains Pfam
           profile PF02353: Cyclopropane-fatty-acyl-phospholipid
           synthase
          Length = 867

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 100 YSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGD 249
           YSD  +  DID    +     AW+++  T+K + +     IL+++    +
Sbjct: 297 YSDIYLHHDIDLMPRNKAAWSAWNFLGSTEKKVCVTYWLNILQNLGENSE 346


>At1g04150.1 68414.m00405 C2 domain-containing protein contains
            INTERPRO:IPR000008 C2 domain
          Length = 1012

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 100  YSDNEIPRDIDDGKASSVISRAWDYVD---DTDKSIAILNVQEILKDMASQGDYAVKHQR 270
            +++   P ++D+   +   SR +D V    D  +SIA   VQ ++ DMASQG+       
Sbjct: 888  HAETVFPDELDEEFDTFPTSRGFDVVRMRYDRVRSIAG-RVQTVVGDMASQGERVQALLS 946

Query: 271  WPKP 282
            W  P
Sbjct: 947  WRDP 950


>At1g01920.1 68414.m00110 SET domain-containing protein low
           similarity to SP|Q43088 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           {Pisum sativum}; contains Pfam profile PF00856: SET
           domain
          Length = 572

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +1

Query: 196 IAILNVQEILKDMASQGDYAVKHQRWPKP---SELSPIYLPVSPVMPVQPLTSLTLTQTA 366
           + +L  + ++ D  S+   + +H  W      S    I LP S V P     +   T T+
Sbjct: 156 VEVLVTKLLILDGDSESKVSFEHFLWANSVFWSRALNIPLPHSFVFPQSQDDTGECTSTS 215

Query: 367 SGPETSPASDN 399
             PET+P + N
Sbjct: 216 ESPETAPVNSN 226


>At2g39220.1 68415.m04817 patatin family protein similar to
           patatin-like latex allergen [Hevea
           brasiliensis][PMID:10589016]; contains patatin domain
           PF01734
          Length = 499

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -1

Query: 403 RDCLKPAKFP--DLTPSV*ELMTLAAAQASPGIPADRWAIIPTVWA 272
           +D LKP   P  DLT S   L + A A  + G     W +    WA
Sbjct: 233 KDTLKPVLIPCYDLTSSAPFLFSRADALETDGYDFKLWEVCRATWA 278


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +1

Query: 244 GDYAVKHQRWPKPSELSPI-YLPVSPVMPVQPLTSLT-----LTQTASGPETSPA 390
           G +A  H   P PS LSP     V P  PV+   SLT     ++ +  G  TSP+
Sbjct: 497 GSHAANHLESPSPSSLSPPGRKKVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPS 551


>At2g26180.1 68415.m03144 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 416

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 392 EAGEVSGPDAVCVRVNDVSGCTGITGD 312
           E  E SG  ++C     VSG TG+  D
Sbjct: 313 EFNESSGSSSICTSTTPVSGKTGLVSD 339


>At1g78710.1 68414.m09174 expressed protein similar to hypothetical
           protein GI:3201617 from [Arabidopsis thaliana];
           expression supported by MPSS
          Length = 359

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 157 SRAWDYVDDTDKSIAILNVQEILKDMASQGDYAVKHQRWPKPSELSPIYLPVSPV 321
           ++ WDY    DK +  +N  E  K   +     + H     PS+    Y  VSPV
Sbjct: 206 AKTWDYFQTGDKIVKEMNRMEAFKIALTTWSKWIDHN--IDPSKTRVFYQGVSPV 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,886,793
Number of Sequences: 28952
Number of extensions: 224055
Number of successful extensions: 895
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)