Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1155
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    29   2.5  
Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical
           protein T12D8.3 protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 464 AWTLTSLPSRSLNLNLACWVFALLCTSTVPSKSITFTNGVWAKKTNLVG 318
           +W   S  SRS  +   C + A L TS  P       +G+W K  + +G
Sbjct: 85  SWLANSQMSRSRAMEAYCELMAQLDTSWDPDAETVKKSGLWEKMPSTMG 133


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 258 DYDSRI-YRFGSGTLKTAFDLMTTSLSSLGWKNPISAAIAS 139
           DY   I YR+     KTA + +  +L+S+GW  P++ A+ S
Sbjct: 853 DYSVHICYRYHRSEYKTAQEKVADTLASVGW--PVTQAVCS 891


>Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 349 PFVKVIDLEGTVDVQSKAKTQXAKLRFKLLEGKEVSV 459
           PFVKVI  E TV     AK    K  F+  +  ++SV
Sbjct: 640 PFVKVISPEDTVGFSESAKCMALKKAFEDAKRSKLSV 676


>Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 349 PFVKVIDLEGTVDVQSKAKTQXAKLRFKLLEGKEVSV 459
           PFVKVI  E TV     AK    K  F+  +  ++SV
Sbjct: 640 PFVKVISPEDTVGFSESAKCMALKKAFEDAKRSKLSV 676


>Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical
           protein H15N14.2b protein.
          Length = 758

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 349 PFVKVIDLEGTVDVQSKAKTQXAKLRFKLLEGKEVSV 459
           PFVKVI  E TV     AK    K  F+  +  ++SV
Sbjct: 574 PFVKVISPEDTVGFSESAKCMALKKAFEDAKRSKLSV 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,546,585
Number of Sequences: 27780
Number of extensions: 238421
Number of successful extensions: 631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)