Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1155
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family...    27   7.0  
At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3) i...    27   7.0  
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    27   9.3  
At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR...    27   9.3  

>At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family
           protein contains proline-rich protein domains,
           INTERPRO:IPR000694
          Length = 189

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 407 VFALLCTSTVPSKSITFTNGVWAKKTNLVGETSN 306
           + ALLC  ++P+ ++  T   W K ++L    +N
Sbjct: 7   IVALLCLVSLPNPTVGSTKKPWPKPSDLANHNNN 40


>At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3)
           identical to SUVH3 [Arabidopsis thaliana] GI:13517747;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH3 (SUVH3) GI:14625477
          Length = 669

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 193 YLLIKSWVEESDFGCNSFLIPII 125
           Y + +SWVE+   GCN+F   ++
Sbjct: 332 YSISESWVEKGKSGCNTFKYKLV 354


>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 2   TTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINISNNRNQEAIAA 154
           T   Y  S  S      E C ++ KKK+   + V  ++ + N RN E   A
Sbjct: 398 TDTFYNCSESSCSFVLHETCANISKKKRHFLSPVPLVLCLQNQRNTETCNA 448


>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.; closest
            homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1449

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 5    TVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYL-INISNNRNQ 139
            TVT P SS S      +ACL +D   +G K   RYL +N   N  Q
Sbjct: 1252 TVTLPRSSLSQSFLRFKACLVVDPLSEG-KGFYRYLEVNFGFNGKQ 1296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,158,394
Number of Sequences: 28952
Number of extensions: 233366
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)