Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1148
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    32   0.091
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   2.0  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    27   2.6  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   4.5  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   4.5  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   6.0  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    26   6.0  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
 Frame = +3

Query: 261 KVFPQKVTRFFREIVTSTMDYRLKNNVERPD-------MIQLLMDAYKGTLKNESNESDE 419
           K+F +K T    E + ST+   +K +++ P+       + +L +D Y   LK  SN+  +
Sbjct: 508 KIFKKKFTTIC-ERIESTLHELVKASLQTPEVFNISQSLFELFLDDYFLALKFSSNDQKD 566

Query: 420 KNVGFAMTEEMLKPKGNVRKW---TQD--ELTAQVSSSSLRDLKAR 542
            NV    TE +   K    +W   T+   EL     SSS R L  R
Sbjct: 567 DNVSEIPTESLEYKKLRCLRWKSLTEQVVELQPSCKSSSQRHLIIR 612


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
 Frame = +3

Query: 345 RPDMIQLLMDAYKGTLKNESN-ESDEKNVGFAMTEEMLKP----KGNVRKWTQDELTAQV 509
           R  +++ +++ Y  + KN++N ES   +    + E +  P    KGN+    +  LT + 
Sbjct: 527 RLPLLKSIVERYLISKKNDNNNESIHISRLLDIEESIWSPRFGLKGNIDATVEVVLTEKP 586

Query: 510 SSSSLRDLKARLMV*RFAFTXSHWNPEAQEKLYEAII 620
            SSS   L   L   R+    SH+   AQ  LY  +I
Sbjct: 587 ESSSTLTLPLELKTGRYVDNISHF---AQSLLYTLLI 620


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 225 CTVSNVSQENGIKVFPQKVTRFFREIVTSTMDYRLKNNVE 344
           CT+  ++ +  I   P K+  F R I ++T+D  LK+ V+
Sbjct: 198 CTILYIAHDEFIAKHPDKIKAFLRAIHSATLD-MLKDPVQ 236


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 267 FPQKVTRFFREIVTSTMDYRLKNNVERPDM--IQLLMDAYKGTLK 395
           FP+KV +F+   V   +DY   N +   D+    LL+D + G LK
Sbjct: 296 FPEKVAKFYAAEVILALDYLHHNQIVYRDLKPENLLLDRF-GHLK 339


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -3

Query: 384 LYKHPSVAESYPVFLRCSSIYNP*CWSRSL*RNELLFVEILLFHFLG*RWKLCSQYHFKS 205
           L K P++A  Y    R     N   + + L +NE L  +  ++  L     LC +  F+ 
Sbjct: 294 LSKFPNLASVYIPLTRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRK 353

Query: 204 LWPTCAK 184
            W  C K
Sbjct: 354 TWIICGK 360


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 546 LAELSNPA-RKKMKLV-RSVRLGSIFLHSPLVLTSLLS*QNLHFFRLIR 406
           L + + PA  KK+K   +S  LGS+F  S + L S ++  N H+ R I+
Sbjct: 618 LEQTAPPADTKKIKTKPKSNTLGSMFKSSLVSLMSTINETNAHYIRCIK 666


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 326 SIIHSA-GHDLSKETSYFLWKYFYSIFLANVGNCAANIILNL 204
           SI+H+  G  L   T++F+ +YF    +   G C   I +NL
Sbjct: 192 SILHTLYGQSLKHNTNFFI-EYFAMDLIMEGGECRGVIAMNL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,300
Number of Sequences: 5004
Number of extensions: 53365
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)