Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1148
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528...    33   0.22 
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842...    33   0.29 
06_01_0208 - 1581686-1581715,1581891-1582091,1582628-1582966,158...    31   1.2  
05_04_0137 + 18343106-18344686                                         30   1.5  
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784           29   3.5  
07_03_0608 - 19924065-19924367,19924517-19924704,19924791-199252...    28   8.2  

>02_05_0540 +
           29852109-29852195,29852304-29852477,29852585-29852841,
           29852954-29853125,29853513-29853551,29853647-29853715,
           29853795-29853911,29854190-29854401,29854578-29854736,
           29854810-29855009,29855100-29855266,29855346-29855442,
           29855560-29855651,29855861-29856139
          Length = 706

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 156 RILRVWSSNV*HKLATEI*NDIGCTVSNVSQENGIKVFPQKVTRFFREIVTSTMDYRLKN 335
           R+L  W  N  H L       IGCTV N+  ++ ++  P  +     +I+   +   L N
Sbjct: 193 RVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADL-N 251

Query: 336 NVERPDMIQLLMDA 377
             + P +++L  D+
Sbjct: 252 LKKTPQLVELFDDS 265


>01_05_0108 +
           18183250-18183336,18183451-18183962,18184074-18184245,
           18184984-18185022,18185117-18185185,18185281-18185397,
           18185842-18186056,18187085-18187240,18187328-18187527,
           18187927-18188084,18188321-18188417,18188738-18188829,
           18189018-18189191
          Length = 695

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 156 RILRVWSSNV*HKLATEI*NDIGCTVSNVSQENGIKVFPQKVTRFFREIVTSTM--DYRL 329
           ++L +W  N  H L       IGCTV N+  ++  +  P  +     +I+   +  D  L
Sbjct: 220 KLLNLWEKNENHTLCLNSAKAIGCTVVNIGTQDLAEGRPHLILGLISQIIKIQLLADVNL 279

Query: 330 KNNVERPDMIQLLMDA 377
           K+    P +++L+ D+
Sbjct: 280 KST---PQLVELVEDS 292


>06_01_0208 -
           1581686-1581715,1581891-1582091,1582628-1582966,
           1583274-1583558,1583769-1583984,1584395-1584739
          Length = 471

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 61  VDVDDLMRRYTNDVIASAGFGLQVNSLVDKDNEFYECGQA 180
           +++ DL+ R T D I   GFG ++N+L   D    +  +A
Sbjct: 184 INIQDLLMRATMDSIFKVGFGFELNTLSGSDESGIQFSKA 223


>05_04_0137 + 18343106-18344686
          Length = 526

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 55  EDVDVDDLMRRYTNDVIASAGFGLQVNSLVDKDNEFYECGQAMFS 189
           E VD+ D +RR+  D I    FG++ ++L++   E     +A+F+
Sbjct: 175 EAVDLQDALRRFAFDSICHVAFGVESSTLLETAREDSGRHEALFA 219


>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
          Length = 394

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -1

Query: 353 IRSFYVVLQSIIHSAGHDLSKETSYFLWKYFYSIFLANVGNCAANIILNLCGQ 195
           IR F++++  ++     D  KET   L + F SI  AN+   A  I L+L G+
Sbjct: 259 IRDFFILVDFVVLDINSD--KETPLILGRPFLSIVEANIDVGAGEIRLDLNGK 309


>07_03_0608 -
           19924065-19924367,19924517-19924704,19924791-19925229,
           19925357-19925851
          Length = 474

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 506 SFIFFLAGFESSANGLTLCIHXLALES*SSGKIV*GDYKVPGREG---PLTYXNIGGLXY 676
           + +  +AG+E+S+  +T  I  LA E    GKI     ++   +G   PLT+ ++  + Y
Sbjct: 277 AILLLIAGYETSSVLITFLIRQLANEPDILGKITDEQEEIARNKGPNKPLTWNDVSRMKY 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,713,321
Number of Sequences: 37544
Number of extensions: 316555
Number of successful extensions: 836
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)