Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1147
(279 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 112 8e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 66 7e-13
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 56 1e-09
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 50 8e-08
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 0.49
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 4.6
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 23 6.1
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 23 8.0
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 23 8.0
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 23 8.0
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 23 8.0
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 112 bits (270), Expect = 8e-27
Identities = 47/63 (74%), Positives = 54/63 (85%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 247 PRA 255
PRA
Sbjct: 61 PRA 63
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 66.5 bits (155), Expect = 7e-13
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = +1
Query: 70 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 249
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 250 RA 255
RA
Sbjct: 63 RA 64
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 55.6 bits (128), Expect = 1e-09
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 240
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 241 YVPRA 255
YVPR+
Sbjct: 61 YVPRS 65
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 49.6 bits (113), Expect = 8e-08
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +1
Query: 67 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 228
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 229 SGGKYVPRA 255
GK+VPR+
Sbjct: 61 GQGKFVPRS 69
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 0.49
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 106 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 207
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 23.8 bits (49), Expect = 4.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 184 SDLQLERINVYYNEASGGKYVPRAS 258
S L +E I+ Y A KY+PR++
Sbjct: 635 SFLDIENIDEYLESAENMKYLPRST 659
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 23.4 bits (48), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 158 SMPCSSEMISQNLAPIWLPH*PAWICTISLILFYLC 51
S+ SE+ S N+ + + P IC+ SL F LC
Sbjct: 683 SLAKMSEIRSLNVQTVSVKGFPRRICSNSLFYFVLC 718
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +1
Query: 112 IGAKFWEIISDEHGIDPTGAYHG 180
+GA W ++ DE G P+ G
Sbjct: 439 LGASIWALVEDEEGKIPSRGKKG 461
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 182 TLTCSWSASMYTTMKPPAASTCPAH 256
T T SA + T+ PP T P+H
Sbjct: 615 TSTLQISAPLETSQSPPTPRTKPSH 639
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 184 SDLQLERINVYYNEASGGKYVPRASSST 267
SDL ++ I +ASG KY S+ST
Sbjct: 121 SDLNMDDIIRRVADASGSKYSVHTSNST 148
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 23.0 bits (47), Expect = 8.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -2
Query: 89 WICTISLILFYL 54
W+ +SL+LFYL
Sbjct: 220 WLANVSLLLFYL 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,105,703
Number of Sequences: 5004
Number of extensions: 18474
Number of successful extensions: 56
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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