Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1146
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    23   4.5  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    23   5.9  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    23   5.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    23   7.8  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 58  REFVSLMRRLCANKTDYKNKRIFFY 132
           R+ +  + + C NKTD + K++  Y
Sbjct: 873 RQMLRQVIQFCENKTDCRRKQVLAY 897


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 87  QSSHQRNEFSVMNNVYMSLLCDT 19
           Q+ H++N FS+   V+ SLL  T
Sbjct: 444 QAFHKKNSFSINMTVHESLLLFT 466


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 37  HIYIIHNREFVSLMRRLCANKT-DYK 111
           HI++ HN E +S +  +  N + +YK
Sbjct: 641 HIFLNHNSELISFLEGILPNASPNYK 666


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 123 YAFIFVVCFISTQSSHQRNEFSVMNNVYMSLL 28
           Y  I   C+   QS + RNE S    ++  ++
Sbjct: 211 YGVIISTCYYFHQSPNPRNEISQQAELFSKIM 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,868
Number of Sequences: 5004
Number of extensions: 9524
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)