Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1146
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1289 - 29018333-29018388,29018484-29018563,29018917-290191...    26   3.7  
01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883     26   3.7  

>06_03_1289 -
           29018333-29018388,29018484-29018563,29018917-29019108,
           29019217-29019447,29019532-29020379
          Length = 468

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 113 FL*SVLLAHNLLIKETNSLL*IMYICH 33
           +L  V+LA+ ++I  T SLL  MYI H
Sbjct: 79  YLVFVVLAYMIIILVTGSLLVFMYIAH 105


>01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883
          Length = 424

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 113 FL*SVLLAHNLLIKETNSLL*IMYICH 33
           +L  V+LA+ ++I  T SLL  MYI H
Sbjct: 79  YLVFVVLAYMIIILVTGSLLVFMYIAH 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,183,469
Number of Sequences: 37544
Number of extensions: 43667
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)