Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1146
         (250 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    25   9.4  
AF100669-7|AAK39263.2|  549|Caenorhabditis elegans Hypothetical ...    25   9.4  

>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
           protein C32E8.11 protein.
          Length = 1927

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 114 IFVVCFISTQSSHQRNEFSVMNNV--YMSLLC 25
           + V+C  S  +  +RN FS++N +  Y S LC
Sbjct: 689 VLVLCAQSNATLWRRNGFSLINQIHNYFSPLC 720


>AF100669-7|AAK39263.2|  549|Caenorhabditis elegans Hypothetical
           protein R11E3.1 protein.
          Length = 549

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 49  IHNREFVSLMRRLCANKTDYKNK 117
           +HN   VS M  L ++K+DY  K
Sbjct: 473 MHNAAAVSTMLNLASDKSDYNQK 495


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,182,826
Number of Sequences: 27780
Number of extensions: 52661
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)