Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1146
         (250 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    25   0.14 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   3.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.1  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    20   5.3  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    20   5.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   7.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   7.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   7.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   7.1  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 25.0 bits (52), Expect = 0.14
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 86  NLLIKETNSLL*IMYICHYY 27
           N LI+E++S++   Y CH+Y
Sbjct: 178 NRLIEESSSVMEAAYSCHWY 197


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 129 KKYAFIFVVCFIS 91
           +K  FI +VCF+S
Sbjct: 414 RKELFIAIVCFVS 426


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 129 KKYAFIFVVCFIS 91
           +K  FI +VCF+S
Sbjct: 467 RKELFIAIVCFVS 479


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 82  FSSKKRILCYE*CIYV 35
           F   +R++CY  CI +
Sbjct: 62  FPQDERLMCYMKCIMI 77


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding
          protein protein.
          Length = 120

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 82 FSSKKRILCYE*CIYV 35
          F   +R++CY  CI +
Sbjct: 36 FPQDERLMCYMKCIMI 51


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 IDFNIAYFYYLT 214
           I F +AYF +LT
Sbjct: 468 ITFPVAYFMFLT 479


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 IDFNIAYFYYLT 214
           I F +AYF +LT
Sbjct: 454 ITFPVAYFMFLT 465


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 IDFNIAYFYYLT 214
           I F +AYF +LT
Sbjct: 488 ITFPVAYFMFLT 499


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 IDFNIAYFYYLT 214
           I F +AYF +LT
Sbjct: 437 ITFPVAYFMFLT 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,074
Number of Sequences: 438
Number of extensions: 605
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)