Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1146
         (250 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61060.1 68418.m07662 histone deacetylase family protein simi...    29   0.57 
At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin ...    27   2.3  
At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    25   5.3  

>At5g61060.1 68418.m07662 histone deacetylase family protein similar
           to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens};
           contains Pfam profile PF00850: Histone deacetylase
           family
          Length = 660

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 37  HIYIIHNREFVSLMRRLCANKTDYKNKRI 123
           H+ ++H ++ V+L++ +   + DY+  RI
Sbjct: 81  HLQLVHTKDHVNLVKSISTKQKDYRRNRI 109


>At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin
           family protein / PAN domain-containing protein contains
           Pfam profiles: PF01453 lectin (probable mannose
           binding), PF00024 PAN domain
          Length = 476

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -2

Query: 132 VKKYAFIFVVCFISTQSSHQRNEFSVMNNVYMS 34
           +K Y F F++C  S    H +++ S+ N++ ++
Sbjct: 3   MKFYTFTFLICLFSKLQGHCKSDISLGNSLTLT 35


>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 70  SLMRRLCANKTDYKNKRIFFY 132
           SL  R CAN+ +Y+N +I  Y
Sbjct: 514 SLTLRGCANEANYRNLKIIIY 534


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,723,036
Number of Sequences: 28952
Number of extensions: 42629
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 12,070,560
effective HSP length: 61
effective length of database: 10,304,488
effective search space used: 216394248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)