Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1139
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989...    32   0.29 
08_02_0645 - 19666189-19666209,19666330-19666437,19667041-196671...    32   0.29 
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78...    31   0.50 
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73...    31   0.50 
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549...    31   0.88 
02_05_0813 - 31951168-31951722                                         29   2.0  
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808...    29   2.7  
11_04_0151 + 14135390-14135630,14135723-14136132                       29   3.5  
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731...    29   3.5  
04_04_0878 + 29039110-29039366,29039634-29039822,29039907-290400...    28   4.7  
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572...    28   6.2  
05_06_0177 + 26164873-26165113,26165416-26165762                       28   6.2  
04_01_0360 - 4720997-4721812                                           27   8.2  
02_05_0427 + 28893726-28893930,28895164-28895210                       27   8.2  

>10_06_0035 -
           9896289-9896390,9897394-9897503,9897587-9897715,
           9898734-9898800,9898888-9898970,9899878-9899959,
           9900049-9900125,9900206-9900289,9900368-9900437,
           9900580-9900668,9900921-9901613,9902833-9903142
          Length = 631

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 133 QACVDKYSRKGYQPWQEWSDHYTXHRYRCEIRDGKY 240
           Q CV + +++  +PW  W D+ T    RC ++D KY
Sbjct: 288 QLCVFQVAKESKKPWIWW-DYVTDFHIRCPMKDKKY 322


>08_02_0645 -
           19666189-19666209,19666330-19666437,19667041-19667152,
           19667321-19667417,19667809-19667911,19668071-19668152,
           19668519-19668665,19668763-19668863,19669037-19669231
          Length = 321

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 159 ERLPAVARVVGSLHVPPLQMRDQRREILHSCCGCRKPKIPENAL-ECHEYIEDENV 323
           ER   +  +   +   P  +R  R+ +  S  G  +    EN L +C+EY++ EN+
Sbjct: 173 ERERDMINIYAQMFTQPFSLRQARKVLFASKLGLAQSDFSENMLKQCNEYVKQENI 228


>12_01_0101 -
           779047-779298,779459-779711,779857-780005,780033-780281,
           780377-780571,780681-780788,780935-781156,781669-781986,
           781988-782615,783059-783135,783161-783267,783491-783619,
           783763-783820,783902-783984,784458-784539,784617-784693,
           784827-784910,784999-785068,785146-785234,785319-786008,
           786485-786797
          Length = 1410

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 133 QACVDKYSRKGYQPWQEWSDHYTXHRYRCEIRDGKY 240
           Q CV K +++  +PW  W D+ T    RC +++ KY
Sbjct: 288 QVCVYKVAKEHGKPWLWW-DYVTDFAIRCPMKEKKY 322


>11_01_0101 -
           738305-738556,738723-738977,739306-739554,739649-739843,
           739953-740060,740184-740405,740806-741390,741495-741863,
           742423-742529,742755-742883,743027-743084,743166-743248,
           744115-744196,744274-744350,744477-744560,744649-744718,
           744796-744884,744965-745654,746127-746439
          Length = 1338

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 133 QACVDKYSRKGYQPWQEWSDHYTXHRYRCEIRDGKY 240
           Q CV K +++  +PW  W D+ T    RC +++ KY
Sbjct: 288 QVCVYKVAKEHGKPWLWW-DYVTDFAIRCPMKEKKY 322


>06_03_1036 +
           27053480-27053729,27054616-27054704,27054881-27054950,
           27055145-27055228,27055332-27055408,27055519-27055583,
           27055723-27055765,27055889-27055952,27056126-27056254,
           27056522-27056625,27056724-27056828
          Length = 359

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 133 QACVDKYSRKGYQPWQEWSDHYTXHRYRCEIRDGKY 240
           Q CV + + +  +PW  W D+   ++ RC +++ KY
Sbjct: 31  QLCVHRVANETGRPWAWW-DYVMDYKIRCSMKEKKY 65


>02_05_0813 - 31951168-31951722
          Length = 184

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 338 LCAIALRRR-SKWRENSANQRAAWRTVPR*TMEGPTKRANSCCCRNERHPADTGRWRAQG 514
           +CA  LR R S     SA+  A+  +V R    G  + A+SCC  +    +D     A G
Sbjct: 30  VCAPCLRERLSHLMSASASASASLPSVVR----GEEEEASSCCSSSSEASSDASSSAASG 85

Query: 515 QASP 526
            +SP
Sbjct: 86  SSSP 89


>10_08_0814 -
           20779400-20779487,20779780-20780030,20780528-20780812,
           20781563-20782008,20782095-20782485
          Length = 486

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 451 GSFCWPFHGLSGNSSPGCPLVCTIL 377
           GSF WPF    G +S GC ++C +L
Sbjct: 435 GSFFWPF---VGGTSSGCFMICIVL 456


>11_04_0151 + 14135390-14135630,14135723-14136132
          Length = 216

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 528 PGDA*PWARHRPVSAGCRSFRQQQELARFVGPSMVYRGTVRQAALW 391
           P  A  WA H+  S   R   QQQ   R  G +  +R  V+ A+ W
Sbjct: 171 PSCASRWAAHQMSSPPARVLHQQQHHNRHSGEARPHRYLVQSASHW 216


>03_02_0917 +
           12372122-12372422,12372487-12372524,12373103-12373186,
           12373796-12374504,12374641-12374729,12374834-12374903,
           12374977-12375060,12375097-12375239,12375337-12375418,
           12375605-12375687,12375769-12375835,12376287-12376376,
           12377631-12377737,12377862-12377969
          Length = 684

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 130 YQACVDKYSRKGYQPWQEWSDHYTXHRYRCEIRDGKY 240
           +Q CV K + +  +PW  W D+      RC +++ KY
Sbjct: 330 HQICVFKAANESGKPWL-WWDYVHDFSIRCPMKEKKY 365


>04_04_0878 +
           29039110-29039366,29039634-29039822,29039907-29040044,
           29040786-29041011,29041686-29041878,29041963-29042123
          Length = 387

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 351 RCVVEVNGERIVQTRGQPGELFPDKPWKGQQNEPIPAVVGMSGIQQTPVGGEPRV 515
           R +  VN   +++ R     +FP+K +     +P+PA +   G  Q  V G P V
Sbjct: 51  RSLSPVNSRSLLEGRDVRDAVFPNKLFDKAFGQPLPAPLVGDGKMQMDVEGAPLV 105


>07_03_1693 -
           28756331-28756435,28756558-28756664,28757114-28757245,
           28757412-28757478,28757553-28757635,28757824-28757905,
           28763101-28763177,28763278-28763361,28763443-28763512,
           28763625-28763713,28763801-28764487,28765700-28765997
          Length = 626

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 133 QACVDKYSRKGYQPWQEWSDHYTXHRYRCEIRDGKY 240
           Q C+ K   + ++PW  W D+      RC +++ KY
Sbjct: 282 QICLFKVGNETHKPW-VWWDYVHDFSIRCPMKEKKY 316


>05_06_0177 + 26164873-26165113,26165416-26165762
          Length = 195

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 529 SRRRLTLGSPPTGVCWMPLIPTTAGIG 449
           SR R+ LGS P+ +C  P IP+   +G
Sbjct: 120 SRCRVYLGSSPSPLCAAPFIPSNKWLG 146


>04_01_0360 - 4720997-4721812
          Length = 271

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 308 RR*ECRIPHVLCAIALRRRSKWRENSANQRAAWRTV 415
           RR + R+  V     LRRR +WRE  A  R    TV
Sbjct: 104 RRKQRRLETVTRRQRLRRRRQWREGKAEARVGEETV 139


>02_05_0427 + 28893726-28893930,28895164-28895210
          Length = 83

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = +3

Query: 162 RLPAVARVVGS-----LHVPPLQMRDQRREILHSCCGCRKPKIP 278
           ++P +A V+GS        PPLQ   +++ ++ S CG  + KIP
Sbjct: 33  QIPTIASVIGSESSPPSSQPPLQRGGEKQHVMASSCGGER-KIP 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,563,508
Number of Sequences: 37544
Number of extensions: 399772
Number of successful extensions: 1282
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)