Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1139
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   3.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   6.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.7  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.8  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   8.8  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 470 NERHPADTGRWRAQGQASPGIFNSRGAADGS 562
           +E HP     +   G AS  IF++ GAA G+
Sbjct: 3   DEDHPIYAPFFGVMGAASAIIFSALGAAYGT 33


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = -1

Query: 464 NSRNWLVLLALPWFIGEQFARLPSGLHYSLSIYFDDATQSRTARGEFDILI--FDVFVAF 291
           NS+   V++A  WF    F  LP      L ++    T+       FD L    D  V  
Sbjct: 167 NSKQAAVIIAFTWFWVTPFTVLP-----LLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFV 221

Query: 290 QCVFRYFWFSTSTAAMKYFPSLISHL 213
            C+F + +       + ++  L+S +
Sbjct: 222 TCIFIWAYVIPLIFIILFYSRLLSSI 247


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = -1

Query: 464 NSRNWLVLLALPWFIGEQFARLPSGLHYSLSIYFDDATQSRTARGEFDILI--FDVFVAF 291
           NS+   V++A  WF    F  LP      L ++    T+       FD L    D  V  
Sbjct: 167 NSKQAAVIIAFTWFWVTPFTVLP-----LLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFV 221

Query: 290 QCVFRYFWFSTSTAAMKYFPSLISHL 213
            C+F + +       + ++  L+S +
Sbjct: 222 TCIFIWAYVIPLIFIILFYSRLLSSI 247


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 417 PDKPWKGQQNEPIPAVVGMSGIQQ 488
           P     GQQ + +   +G+ G+QQ
Sbjct: 819 PSSVQSGQQQQSVLQGLGVQGVQQ 842


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 533 IFQETPDPGLATDRCLLDAAHSDNSRNWLV 444
           + QET  PG   D    D      SRN L+
Sbjct: 483 LLQETRTPGFGKDVLATDERSFSGSRNPLL 512


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 444 NEPIPAVVGMSGIQQTPV 497
           NE   A++G+   Q TPV
Sbjct: 17  NETAKAIIGVDECQATPV 34


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 311 R*ECRIPHVLCAIALRRRSKWRE 379
           R EC +P   CA+  + +   +E
Sbjct: 50  RPECMVPEYQCAVKRKEKKAQKE 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,997
Number of Sequences: 438
Number of extensions: 4109
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)