Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1138
         (299 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48154| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.30 
SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.70 
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.92 
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                28   1.2  
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      27   2.1  
SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)             27   2.8  
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)                26   4.9  
SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   6.5  
SB_39407| Best HMM Match : TIG (HMM E-Value=0)                         26   6.5  
SB_49919| Best HMM Match : zf-CCHC (HMM E-Value=0.19)                  25   8.6  
SB_40233| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-23)           25   8.6  
SB_33036| Best HMM Match : Ion_trans_2 (HMM E-Value=3e-08)             25   8.6  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 25   8.6  
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_48154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 125 HAKYTCSFCGKDAMKRSCVGXWSCKRCK--RTVAGGAWVFSTTAAYHAD 265
           HA Y CS   ++ +K +    +     K  R +    WV  T + YH +
Sbjct: 64  HASYLCSLKRRELLKPNIAQAYQAHHIKNWRKITSDPWVLETASGYHLE 112


>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = +2

Query: 38  TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC------SFCGKDAMKRSCVGXWSCK 199
           T+  GIT    T Y +S +K+V +   T+ A  TC      S   K  + RS    WS  
Sbjct: 19  TRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITCMMSTHYSSSYKKLVPRSLTTRWSGI 78

Query: 200 RC 205
            C
Sbjct: 79  TC 80


>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 13  EVYQNGQTYQKGWNYWQIWHTLRCL 87
           + YQ     + GW  WQIW  LR +
Sbjct: 644 DTYQGRPLMKYGWLKWQIWRALRLI 668


>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 80  GASLRKMVKKMEVTQHAKYTCSFCGK 157
           G   +K ++  E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234


>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 159 SLPQNEQVYFACWVTSIFLTIL 94
           S P +  V FA W  SIFLTI+
Sbjct: 133 SAPTSLSVIFAAWFLSIFLTII 154


>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 177 QERFIASLPQNEQVYFACWVTSIFLTILRRE 85
           +++  AS  + E  ++ CWV S F+T  + +
Sbjct: 167 RKKIAASCWEKESEFYECWVASFFITTAKTQ 197


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 137 TCSFCGKDAMKRS 175
           TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255


>SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)
          Length = 906

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 291 YFT*PPDSRSA**AAVVENTQAPPATVLLHRLQDQXPTQERFIASLPQNEQVYF-ACWVT 115
           Y+   P + S+   A   N    PA  +   L+D      + + +LPQN +++  AC V+
Sbjct: 324 YYEYSPGAASSKIIATDSNANDEPANHVQLELEDPCAVNTK-LTTLPQNSRMFILACKVS 382

Query: 114 SIFLTILRREAP 79
            +   I    AP
Sbjct: 383 WVVFNIAANVAP 394


>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
          Length = 815

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 13  EVYQNGQTYQKGWNYWQIWHTLRCL 87
           +VY+N    + G   WQIW  LR +
Sbjct: 643 DVYRNEPLQRYGMLKWQIWRALRLI 667


>SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 164 MKRSCVGXWSCKRCKRTVA 220
           +KR+  G W CK CK+T +
Sbjct: 552 LKRAPKGGWYCKFCKKTTS 570


>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 618

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 92  RKMVKKMEVTQHAKYTCSFCGKDAMKRS 175
           R+ VK + + +  KY C  C KD  + S
Sbjct: 410 REQVKDLFIKEGEKYRCRLCSKDFTRLS 437


>SB_39407| Best HMM Match : TIG (HMM E-Value=0)
          Length = 1710

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 5    VSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGK 157
            +S  +TK+  RT+K  I GKY       +++      V     YT S   K
Sbjct: 1245 MSSSYTKIICRTQKSHIPGKYNVSVSVGVQQCACTSHVGCSFAYTTSLTPK 1295


>SB_49919| Best HMM Match : zf-CCHC (HMM E-Value=0.19)
          Length = 523

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 167 KRSCVGXWSCKRCKRT-VAGGAW 232
           K+ C G + C  CKR  ++G +W
Sbjct: 443 KKRCFGEFKCPLCKRKWMSGNSW 465


>SB_40233| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-23)
          Length = 750

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 176 CVGXWSCKRCKRTVAGG--AWVFSTTAAYHADLLSGGYVK 289
           C+G W     + T   G  AW  + T   + D++ GG+ K
Sbjct: 620 CIGAWIYTNEEGTYLEGTYAWFITFTTIGYGDIVPGGHSK 659


>SB_33036| Best HMM Match : Ion_trans_2 (HMM E-Value=3e-08)
          Length = 298

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 176 CVGXWSCKRCKRTVAGG--AWVFSTTAAYHADLLSGGYVK 289
           C+G W     + T   G  AW  + T   + D++ GG+ K
Sbjct: 168 CIGAWIYTNEEGTYLEGTYAWFITFTTIGYGDIVPGGHSK 207


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 143 SFCGKDAMKRSCVGXWSCKRCKRTVAGGAW 232
           S C KDA  ++ VG ++C RCK    G  +
Sbjct: 911 SACHKDAACQNTVGSYAC-RCKEGYEGDGY 939


>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 13  EVYQNGQTYQKGWNYWQIWHTLRCL 87
           +VYQ  +  + G   WQIW  LR +
Sbjct: 558 DVYQVNKLQKFGMLKWQIWRALRLI 582


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,962,564
Number of Sequences: 59808
Number of extensions: 196798
Number of successful extensions: 560
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)