Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1135
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    27   1.6  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   3.6  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    26   4.8  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   4.8  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   6.3  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   6.3  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   8.4  

>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 107 KKRLVCNAVNTSSYRLYSGSVAPGQEQ 187
           K+ L+C+  +  + + + GS APGQ+Q
Sbjct: 23  KRSLLCSNASVIASKRFQGSFAPGQQQ 49


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 310 VVLEANERPGGRIHS 354
           ++LEA ER GGRI+S
Sbjct: 547 IILEAKERTGGRIYS 561


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +2

Query: 74  QTFSRLLSESNKKRLVCNAVNTSSYRLYSGSVAPGQEQCILDSCSISPTCQEPRVIIVGA 253
           +TF R L      +++C  +   S+  Y  S +PG+       C+      +    ++G 
Sbjct: 250 ETFLRTLKRETGLQVICIKLGNLSFLNYDHSSSPGKSNYPPSLCTERKVLNKIFDSLLGC 309

Query: 254 EWQDFQRHTG 283
            W    RH G
Sbjct: 310 -WPSPTRHVG 318


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 400 SGACLPNSVYTLASQDRLLQTPLQRL 477
           SG CLP+ VY L      +QT +  L
Sbjct: 123 SGFCLPDQVYHLIDNHSCIQTAVSHL 148


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 2   FFIYLNGCEIVIKMKLSRV 58
           + +YL+ C + +K KLS+V
Sbjct: 587 YLVYLSNCPLCLKFKLSKV 605


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 302 RIPH*VNRCAAESPAIPHLQLSPLVPDKSD 213
           +IP  VN      P + H+   PL+ D SD
Sbjct: 582 QIPENVNASEESYPNVKHISKLPLINDSSD 611


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 352 NVFFHQDAHSPPRLQNYESH 293
           N  F QD H  PRL+  E+H
Sbjct: 454 NRIFAQDPHPSPRLKKEETH 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,820
Number of Sequences: 5004
Number of extensions: 55296
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)