Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1135
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0076 - 12120900-12121183,12123083-12123188 51 8e-07
09_03_0073 - 12092566-12092645,12092788-12092869,12092979-120932... 50 1e-06
04_04_1545 - 34278266-34278586,34278685-34279114,34279225-342793... 49 3e-06
04_04_1544 - 34273909-34274220,34274340-34274769,34274933-342750... 49 3e-06
01_06_0454 - 29506637-29508175 49 3e-06
08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882 48 6e-06
04_04_1203 - 31703512-31703832,31703922-31704351,31704454-317045... 39 0.003
02_05_0129 + 26064518-26065107,26065501-26065522 39 0.003
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 34 0.075
04_04_0783 - 28040828-28041615,28041942-28043589 33 0.17
07_03_1344 - 25912639-25914060 32 0.30
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009 30 1.6
03_06_0628 - 35179951-35180265,35180653-35180889,35180982-351811... 29 2.1
01_06_1494 + 37756872-37757137,37757318-37757407,37758392-377584... 29 2.8
01_03_0306 + 14875755-14876822 29 3.7
06_03_0101 + 16659185-16660546 28 4.9
09_04_0321 - 16664316-16664939,16665369-16666262 28 6.5
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 27 8.6
07_03_0683 + 20671067-20671951,20672030-20672203 27 8.6
04_01_0260 - 3506672-3508981 27 8.6
01_06_0777 + 31919196-31919909,31919984-31920082 27 8.6
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 27 8.6
>09_03_0076 - 12120900-12121183,12123083-12123188
Length = 129
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAVIEMGAEWISG 405
G++G+SA RL++ GI + ++LEA + GGR+H +E+GA W+ G
Sbjct: 33 GISGISAGKRLSEAGITDILILEATDHIGGRMHKQRFAGVNVEIGANWVEG 83
>09_03_0073 -
12092566-12092645,12092788-12092869,12092979-12093236,
12093314-12093463,12093581-12093724,12093744-12094077,
12094639-12094785,12097446-12097695,12100511-12100616
Length = 516
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAVIEMGAEWISG 405
G++G+SA R+ + GI + ++LEA +R GGR+H +E+GA W+ G
Sbjct: 33 GISGISAGKRIWEAGIADVLILEATDRIGGRMHKQSFAGVNVEIGANWVEG 83
>04_04_1545 -
34278266-34278586,34278685-34279114,34279225-34279322,
34279415-34279517,34279609-34279694,34279778-34279865,
34279950-34280063,34280147-34280235,34280369-34280484,
34280906-34280951
Length = 496
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAVIEMGAEWISGACLPNSVYT 432
G++G++AA L+ + +LE+ +R GGR+H+ + I+MGA W+ G C NS
Sbjct: 38 GISGIAAARALSNASFK-VTLLESRDRLGGRVHTDYSFGCPIDMGASWLHGVCNENS--- 93
Query: 433 LASQDRLLQTPLQR 474
LA RLL L R
Sbjct: 94 LAPLIRLLGLRLYR 107
>04_04_1544 -
34273909-34274220,34274340-34274769,34274933-34275030,
34275178-34275280,34275386-34275471,34275590-34275677,
34275773-34275886,34275975-34276179,34276530-34276557
Length = 487
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAVIEMGAEWISGACLPNSVYT 432
G++G++AA L+ VLE+ +R GGR+H+ + I+MGA W+ G C NS+
Sbjct: 32 GISGVAAARALSNASFE-VTVLESRDRVGGRVHTDYSFGCPIDMGASWLHGVCNENSLAP 90
Query: 433 L 435
L
Sbjct: 91 L 91
>01_06_0454 - 29506637-29508175
Length = 512
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNF--VVLEANERPGGRIHSCWLGDAVIEMGAEWISGACLPNSV 426
G++GL+AAHRL G F V+EA +R GGRI + +EMGA W+ G + + V
Sbjct: 14 GISGLAAAHRLCGAGGDRFEVAVVEAGDRVGGRILTSEFAGHRVEMGATWVQGV-VGSPV 72
Query: 427 YTLA 438
Y LA
Sbjct: 73 YALA 76
>08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882
Length = 785
Score = 48.0 bits (109), Expect = 6e-06
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLG--DAVIEMGAEWISGACLPNSV 426
G+AGL+AA +L + G+R +VLE RPGGR+++ LG A +E+G I+G N +
Sbjct: 171 GLAGLAAARQLLRFGLR-VLVLEGRARPGGRVYTTHLGGDQAAVELGGSVITG-IHTNPL 228
Query: 427 YTLASQDRLLQTPLQRLDSSRGLFCTSG 510
LA Q L PL ++ S L+ G
Sbjct: 229 GVLARQ---LGIPLHKVRDSCPLYHHDG 253
>04_04_1203 -
31703512-31703832,31703922-31704351,31704454-31704551,
31704661-31704763,31704849-31704934,31705022-31705109,
31705194-31705358,31705412-31705500,31705622-31705734,
31707646-31707658
Length = 501
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAVIEMGAEWISGACLPN 420
G AG++AA+ L V+LE+ +R GGRIH+ + +++GA +SG + N
Sbjct: 26 GFAGIAAANALRNASFE-VVLLESRDRIGGRIHTDYSFGFPVDLGASCLSGTIIFN 80
>02_05_0129 + 26064518-26065107,26065501-26065522
Length = 203
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNF--VVLEANERPGGRIHSCWLGDAVIEMGAEWISGACLPNSV 426
G++ L+AAHRL G F V+EA +R RI + +EMGA W+ G + + V
Sbjct: 14 GISCLTAAHRLCGAGGDKFEVAVVEAGDRVDCRILTSEFAGHRVEMGATWVQGV-VGSPV 72
Query: 427 YTLA 438
Y LA
Sbjct: 73 YALA 76
>10_08_0731 +
20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 34.3 bits (75), Expect = 0.075
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAV-IEMGAEWISG 405
G AGL+AA L + G + VLEA R GGR+++ + +V +++GA I+G
Sbjct: 748 GPAGLTAARHLQRQGF-SVTVLEARNRIGGRVYTDRVSLSVPVDLGASIITG 798
>04_04_0783 - 28040828-28041615,28041942-28043589
Length = 811
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHS 354
G+AGL+AA +L G + VVLE +R GGR+++
Sbjct: 206 GLAGLAAARQLVAFGFK-VVVLEGRKRCGGRVYT 238
>07_03_1344 - 25912639-25914060
Length = 473
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRI 348
G+AGL+AA+ L + F +LEA++R GGR+
Sbjct: 55 GLAGLAAANHLASMSVP-FTLLEASDRLGGRV 85
>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
Length = 754
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = -1
Query: 457 ATVCPAMPEYRQNLVNKLQISILHPSQ*LHLQANMNVFFHQDAHSP-PRLQNYESHIELT 281
A P P+ N+ I +L + N+ + H P P+++ E+HIE+T
Sbjct: 26 AMAMPGCPDKCGNVAIPYPFGIGENCSATNLNSYFNLMCNDTFHPPRPQIREPEAHIEVT 85
Query: 280 GVPLKVLPFRTYN--YHPWFLTSRTDT 206
G+ L+ R + H F ++ T T
Sbjct: 86 GISLERGEMRVLSPVNHICFTSNTTST 112
>03_06_0628 -
35179951-35180265,35180653-35180889,35180982-35181140,
35181673-35181864,35182696-35182983,35183289-35183342,
35183561-35183671,35183780-35184011,35184097-35184302
Length = 597
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAVIEMGAEWISG 405
G+ GL A L + ++ +VLE+++RPGG HS + + G SG
Sbjct: 84 GIGGLCCAGLLARYN-QDVLVLESHDRPGGAAHSFDIKGFNFDSGPSLFSG 133
>01_06_1494 +
37756872-37757137,37757318-37757407,37758392-37758443,
37759226-37759315,37759520-37759642,37759752-37759850
Length = 239
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 326 MSVLVEEYIHVGLEMQLLRWVQNGYLELVYQILSILWHRRTDCCRHLY 469
+SVL ++ + LLR + G +EL + S ++HR CR L+
Sbjct: 40 VSVLAYGFLELHFLGDLLRGFRGGRVELTFHPASEIYHRVASKCRSLH 87
>01_03_0306 + 14875755-14876822
Length = 355
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = +2
Query: 104 NKKRLVCNAVNTSSYRLYSGSVAPGQEQCILDSCSISPTCQEPRVIIVGAEWQDFQRHT 280
N + N +N +SY SV G E SC CQ I G QD +T
Sbjct: 130 NTLAYIYNGLNRTSYTTACASVCGGPEDLTNGSCLGVGCCQNANAIPKGLTRQDIYLYT 188
>06_03_0101 + 16659185-16660546
Length = 453
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 332 RSFASKTTKLRIPH*VNRCAAESPAIPHLQL 240
R+ AS TT +P V CAA PA+ H +
Sbjct: 26 RTTASSTTSTGLPIEVTFCAARPPALAHFSI 56
>09_04_0321 - 16664316-16664939,16665369-16666262
Length = 505
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 310 VVLEANERPGGRIHSCWLGDAVIEMGAEWISGACLPNSVYTLASQDRLLQTPL---QRLD 480
V EA + G I S W+ D +G + +S A LP+S L T L +RL
Sbjct: 94 VAHEALHKKDGAISSRWVPDNANVLGHQDVSMAWLPSSSPLWKHMRTLASTLLFTSRRLG 153
Query: 481 SSRGL 495
+SRG+
Sbjct: 154 ASRGI 158
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 157 QWLCGSWSRAVYLRLLQYQSDLS--GTKGDNCRCG 255
QW C S+A Y Y++ L GT+G +C CG
Sbjct: 143 QWACARCSKA-YAVHSDYKAHLKTCGTRGHSCDCG 176
>07_03_0683 + 20671067-20671951,20672030-20672203
Length = 352
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLG 366
G AGLS A+ L++ + V+E + PGG WLG
Sbjct: 91 GSAGLSCAYELSKDPSVSVAVIEQSVSPGG---GAWLG 125
>04_01_0260 - 3506672-3508981
Length = 769
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 71 WQTFSRLLSESNKKRLVCNAVNTSSYRLYSGSV 169
W+ R + N R + N+ N + YR++SG++
Sbjct: 354 WRMLRRFILSLNLFRFLVNSNNPTRYRMWSGTI 386
>01_06_0777 + 31919196-31919909,31919984-31920082
Length = 270
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 404 PDIHSAPISITASPSQHECILPPGRSFASKTTKLR 300
P+ H S+ +PS+ + +L PG+S A K + R
Sbjct: 3 PEPHRVDASLAPNPSRRQPLLRPGKSTAFKREERR 37
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 27.5 bits (58), Expect = 8.6
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Frame = -1
Query: 520 TARPRLYRINHATSLTSVKVSATVCPA--MPEYRQNLVNKLQISILHPSQ*LHLQANMNV 347
TA PR I + S + +A + + Y NL++ + H + LHL
Sbjct: 142 TAEPRATGIVWSVSRDVSRYTALLAAPGEVAVYLGNLIDDTYTGVYHANLTLHL------ 195
Query: 346 FFHQDAHSPP---RLQNYESHIELTGVPLKVLPFRTYNYHPWFLTSRTDTARV*DTLLLT 176
+FH A PP + Q + H +L + LP N WF + + ++ +
Sbjct: 196 YFHPAAAPPPPEQQQQQQQQHADLIFPISRSLPL---NDGQWFAIQNSTNVQSKKLVIPS 252
Query: 175 RSHRATVE 152
++RA +E
Sbjct: 253 NTYRAVLE 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,749,597
Number of Sequences: 37544
Number of extensions: 366136
Number of successful extensions: 886
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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