Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1135
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067936-2|AAC19213.1|  527|Caenorhabditis elegans Hypothetical ...    55   3e-08
Z78198-5|CAB01571.1|  437|Caenorhabditis elegans Hypothetical pr...    48   7e-06
Z81512-6|CAB04171.3|  455|Caenorhabditis elegans Hypothetical pr...    44   6e-05
AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of...    33   0.20 
AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical ...    33   0.20 
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    28   5.8  
AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF067936-2|AAC19213.1|  527|Caenorhabditis elegans Hypothetical
           protein C24G6.6 protein.
          Length = 527

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 29/68 (42%), Positives = 45/68 (66%)
 Frame = +1

Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAVIEMGAEWISGACLPNSVYT 432
           G++GLS A RL + GI +F + E  +R GGRIH+    D  ++MGA++I+GA   N +Y 
Sbjct: 40  GISGLSTARRLIELGIDDFDIYEGLDRIGGRIHAIPYKDGFLQMGAQFINGA--QNPLYK 97

Query: 433 LASQDRLL 456
           +A++  LL
Sbjct: 98  IANRLGLL 105


>Z78198-5|CAB01571.1|  437|Caenorhabditis elegans Hypothetical
           protein F55C5.6 protein.
          Length = 437

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 25/70 (35%), Positives = 40/70 (57%)
 Frame = +1

Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAVIEMGAEWISGACLPNSVYT 432
           G AGL AA R  + GI  + + E ++R GGR++S    +  ++ GAE+I+G    N +Y 
Sbjct: 30  GFAGLRAAQRFEELGIV-YTIFEGSDRIGGRVYSFPYQNGYLQFGAEYINGE--DNDIYE 86

Query: 433 LASQDRLLQT 462
           +  +  LL T
Sbjct: 87  IVERKNLLST 96


>Z81512-6|CAB04171.3|  455|Caenorhabditis elegans Hypothetical
           protein F25C8.2 protein.
          Length = 455

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 25/76 (32%), Positives = 39/76 (51%)
 Frame = +1

Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAVIEMGAEWISGACLPNSVYT 432
           G+AGL +A    Q GI ++ + E + R GGR++     D  +  GAE+++G  + N VY 
Sbjct: 15  GLAGLRSAIHFEQVGI-DYTIFEGSNRIGGRVYPFEYQDGYLHFGAEYVNG--VDNEVYN 71

Query: 433 LASQDRLLQTPLQRLD 480
           L  +  L      R D
Sbjct: 72  LVEKYDLFDKTKPRTD 87


>AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of
           presenilin 5 protein.
          Length = 770

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = +1

Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHS 354
           G AG+SAA +L   G  + +VLEA    GGRIHS
Sbjct: 143 GAAGISAATQLESFGF-DVIVLEARNCIGGRIHS 175


>AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical
           protein Y40B1B.6 protein.
          Length = 770

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = +1

Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHS 354
           G AG+SAA +L   G  + +VLEA    GGRIHS
Sbjct: 143 GAAGISAATQLESFGF-DVIVLEARNCIGGRIHS 175


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
            roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = +2

Query: 32   VIKMKLSRVKLIIWQTFSR----LLSESNKKRLVCNAV--NTSSYRLYSGSVAPGQEQCI 193
            ++K +LS   + IWQTF R    L S  ++ +L+ +A+  + + Y  +  S+  G+   I
Sbjct: 1656 IVKAELSIFNVPIWQTFLREVSWLSSRFSRSQLLSSAIFAHANKYAKFGKSLPDGERNVI 1715

Query: 194  LD 199
             +
Sbjct: 1716 YE 1717


>AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical
           protein T11F1.6 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 153 SRYDDVFTALQTSLFLLDSLNNLENVCHIISLTRDNFILITISQPF 16
           S   D++ +L     +L  LN L  + +I  L  + +++  IS PF
Sbjct: 374 SYVSDIYGSLSIKNTILKDLNFLSRLMYIALLEENRYVIQIISNPF 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,569,631
Number of Sequences: 27780
Number of extensions: 322349
Number of successful extensions: 754
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)