Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1132
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   103   2e-23

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  103 bits (246), Expect = 2e-23
 Identities = 47/83 (56%), Positives = 59/83 (71%)
 Frame = +2

Query: 2   TIINIRLNNISFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGG 181
           T+IN+R   +S  Q+PLF  A+ IT+          AG + +L +DRNLNTSF+ P GGG
Sbjct: 174 TMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGG 233

Query: 182 DPILYQHLF*FFGHPEVYILILP 250
           DP+LYQHLF FFGHPEVYILI+P
Sbjct: 234 DPVLYQHLFWFFGHPEVYILIMP 256



 Score = 75.4 bits (177), Expect = 5e-15
 Identities = 37/86 (43%), Positives = 53/86 (61%)
 Frame = +1

Query: 256 GIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATII 435
           G++SHII      K  F                 +V +HH+FTVG+D+DTRAYF++AT++
Sbjct: 259 GVVSHIIPS-LAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMV 317

Query: 436 IAVPTGIKIFR*LATIHGTQINYNLI 513
           IA+PTGIKIF  LAT+ G  I ++ +
Sbjct: 318 IAIPTGIKIFSWLATLTGGAIQWSRV 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,605,554
Number of Sequences: 5004
Number of extensions: 26583
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)