Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1132
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   54   6e-08
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)              27   7.6  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 24/36 (66%), Positives = 32/36 (88%)
 Frame = +1

Query: 391 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQI 498
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAI 36


>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
          Length = 182

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -3

Query: 186 GSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFNRI 13
           G   P G K D  K R    ++IAP K   D+   +A +    +  GN S  + +++I
Sbjct: 77  GDAGPRGLKGDPGKIRDAPRVIIAPQKLNIDS---SATVVLNCSVSGNPSAPVTWSKI 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,978,732
Number of Sequences: 59808
Number of extensions: 178797
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)