Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1132
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 267 SYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIH 383
           SYYF R    R  W  +NN+   S  +I + CL +S IH
Sbjct: 42  SYYFARLAI-RTLW--KNNIFSNSTRLILLVCLLNSIIH 77


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 233 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 138
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 233 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 138
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical protein
            F54D11.2 protein.
          Length = 1145

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 186  GSPPPAGSKNDVFKFRSVNNIVIAPAKTGSD 94
            G PPPA S     +F +  N+V +   TG D
Sbjct: 1048 GPPPPAPSPRTEDRFLAFQNLVASTITTGDD 1078


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,676,283
Number of Sequences: 27780
Number of extensions: 149511
Number of successful extensions: 340
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)