Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1128
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   1.5  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   5.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   5.9  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 272 SPFPSXA--PLTSMDVERALSFAPLRGTAXFKCSGG 373
           +P+PS    P  S+ VE +  ++PL      K +GG
Sbjct: 12  APYPSTDQNPYPSIGVESSAFYSPLSNPYALKDAGG 47


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 384 DSEQPPEHLKXAVPRSGAKLNARSTS 307
           D  +PPE         GA+ NA STS
Sbjct: 37  DGGKPPELTGSTNGDGGARSNADSTS 62


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 384 DSEQPPEHLKXAVPRSGAKLNARSTS 307
           D  +PPE         GA+ NA STS
Sbjct: 193 DGGKPPELTGSTNGDGGARSNADSTS 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,938
Number of Sequences: 336
Number of extensions: 975
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)