Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1128
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    27   1.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   4.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   7.6  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    24   10.0 
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    24   10.0 

>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 399 QHPNHDSEQPPEHLKXAVPRSGAKLNARSTSILVR 295
           + P++DSE P EH + ++P S  +    + + ++R
Sbjct: 16  EKPSNDSEHPFEHTRVSIPPSETRSALENAANILR 50


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 398 NIRTTTANSLQST*XPRCHEAERSSTRALRPYSSEE 291
           N +T   NS ++T       AE SST  + PY S +
Sbjct: 164 NDKTLEKNSAKATINKSNSTAETSSTATVEPYDSND 199


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 329 SSTRALRPYSSEEXRSGTETA*LXTPSQFS 240
           SST    P SSE   S TE++ L  PS  S
Sbjct: 116 SSTSFFSPTSSEYTPSSTESSSLLDPSSVS 145


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 396 HPNHDSEQPPEH 361
           HP  DS++PP+H
Sbjct: 5   HPKGDSKEPPKH 16


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 344 GTAXFKCSGGCSLSWFGC 397
           GT+ F C+G   L + GC
Sbjct: 131 GTSRFSCNGNTLLHFMGC 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,285
Number of Sequences: 5004
Number of extensions: 16301
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)