Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1128
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0326 + 2372176-2373057,2373146-2373610 31 0.44
11_03_0128 - 10437407-10438049,10438097-10438272 29 1.4
09_04_0500 - 18120287-18122233 29 1.8
08_02_1080 - 24197514-24199415 27 5.5
04_04_1304 + 32490971-32491552 27 5.5
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 27 7.2
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 27 7.2
07_03_1542 + 27577257-27577559,27577653-27577730,27577900-275779... 27 7.2
05_07_0005 + 26997352-26998674 27 7.2
07_01_1033 + 8958317-8959254,8959438-8959673,8960440-8960486,896... 26 9.5
05_04_0064 - 17613070-17614749 26 9.5
01_06_1822 - 40132919-40133208,40134313-40134398,40135067-401355... 26 9.5
>06_01_0326 + 2372176-2373057,2373146-2373610
Length = 448
Score = 30.7 bits (66), Expect = 0.44
Identities = 25/80 (31%), Positives = 39/80 (48%)
Frame = -1
Query: 363 HLKXAVPRSGAKLNARSTSILVRGASLGNGDSVTXNAIAVLIWVWRXTDHLTTASNGSDS 184
H+ +VPRSG + +RG S G+G SV ++ IW+ DH+ + SN SD
Sbjct: 220 HIHNSVPRSGGLIRDSMHHFGIRGESDGDGISVMGSS---NIWI----DHV-SMSNCSDG 271
Query: 183 SSRGTEYSTTCRTARRAYSK 124
T+ ST + ++K
Sbjct: 272 LIDITDGSTAITISNSHFTK 291
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 186 SSSRGTEYSTTCRTARRAYSKARMACDTGXKAS 88
S S + STTCRT RA + C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164
>09_04_0500 - 18120287-18122233
Length = 648
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 268 AVSVPERXSSDEYGRRARVELRSASWHR 351
AV+V +R S EY +R E RS SW R
Sbjct: 2 AVAVLDRSFSSEYPASSRTEGRSCSWKR 29
>08_02_1080 - 24197514-24199415
Length = 633
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 268 AVSVPERXSSDEYGRRARVELRSASWHR 351
AV+VP+ ++ Y + ++E RS SW R
Sbjct: 2 AVAVPDHTFNNGYSSKNQIEGRSLSWKR 29
>04_04_1304 + 32490971-32491552
Length = 193
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 239 MRTAMAFXVTLSPFPSXAPLTSMDVERALSFAP 337
+RTA A +L P P +P S+D+ S+AP
Sbjct: 49 IRTAAAASASLPPVPGYSPRMSIDMACTHSWAP 81
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 238 NENCDGVXSHAVSVPERXSSDEYGRRARVELRSASWHRGLQVL 366
NEN D + +AVS + + E + ++ L S S GL +L
Sbjct: 834 NENVDKIVGYAVSYHLKHNKVEISKDGKLVLASESLKHGLNML 876
>08_01_0003 +
30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -1
Query: 393 PNHDSEQPPEHL-----KXAVPRSGAKLNARSTSILVRGASLGNGDSV 265
P+ SEQP EHL PRSG ++ S S + + LG+G V
Sbjct: 144 PDDQSEQPTEHLVKSPNNDEAPRSG-QMEGDSPSDNLNTSGLGSGTEV 190
>07_03_1542 +
27577257-27577559,27577653-27577730,27577900-27577999,
27578677-27578819,27579242-27579478
Length = 286
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 351 AVPRSGAKLNARSTS--ILVRGASLGNGDSVTXNAIAVL 241
A+ R GA L R T ++ GA+ +GD VT A AVL
Sbjct: 17 ALRRGGAALRPRRTPSRLVAVGATSSSGDGVTTAADAVL 55
>05_07_0005 + 26997352-26998674
Length = 440
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 345 PRSGAKLNARSTSILVRGASLGNG 274
P+ G +LNA S +I+++GA L +G
Sbjct: 156 PKLGVRLNAVSYNIILKGACLRDG 179
>07_01_1033 +
8958317-8959254,8959438-8959673,8960440-8960486,
8960683-8960733
Length = 423
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 285 LGNGDSVTXNAIAVLIWVWRXTDHLTTASNGSDSSSRGTEYSTTCRTAR 139
L + D + VLI +W L A+ ++S G T RTAR
Sbjct: 10 LADSDGASPPPHWVLIDIWCYIGDLPNATTAESTTSTGLPIKVTFRTAR 58
>05_04_0064 - 17613070-17614749
Length = 559
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 210 TTASNGSDSSSRGTEYSTTCRTARRAYSKARMACDTG 100
+++S+ S S+R + YS+T + R C TG
Sbjct: 37 SSSSSSSSRSARSSNYSSTVSSTESGAGSHRRRCKTG 73
>01_06_1822 -
40132919-40133208,40134313-40134398,40135067-40135566,
40135708-40135905
Length = 357
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 257 FXVTLSPFPSXAPLTSMDV-ERALSFAPLRGTAXFKCSGGCSLSW 388
F + PF + DV +A+ A + A F GGC++SW
Sbjct: 58 FTLHTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSW 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,031,924
Number of Sequences: 37544
Number of extensions: 131697
Number of successful extensions: 396
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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