Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1128
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           27   4.3  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   27   7.4  
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 26   9.8  

>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 384 DSEQPPEHLKXAVPRSGAKLNARSTSILVRGASLGNG 274
           DS+ PPE L    P++    N  +  +   G++ GNG
Sbjct: 231 DSDSPPEQLNNLGPQNNQNTNRENEVLNGNGSNGGNG 267


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 270  SVTXNAIAVLIWVWRXTDHLTTASNGSDSSSRGTEYS 160
            SV+ N+ A L  +W    HL    N SD+SS G +YS
Sbjct: 903  SVSLNSNADLGLLWNTGSHLIICFNISDNSS-GCQYS 938


>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 201 SNGSDSSSRGTEYSTTCRTARRAYSKA 121
           S GSD+SSR   YS   R+A R+YS++
Sbjct: 408 SVGSDASSRSRSYS---RSASRSYSRS 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,942,731
Number of Sequences: 59808
Number of extensions: 138258
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)