Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1128
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    28   2.1  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    28   2.1  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    28   2.8  
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    27   3.7  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 245 TAMAFXVTLSPFPSXAPLTSMDVERALSFAPLRGTA 352
           + +A   T SP PS     S+DV+R L+F  +R  A
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 245 TAMAFXVTLSPFPSXAPLTSMDVERALSFAPLRGTA 352
           + +A   T SP PS     S+DV+R L+F  +R  A
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -1

Query: 213 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGXKAS 88
           ++  S G  SSSRG+ Y  T   R+++R+ S++R    +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147


>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
            ZK370.4b protein.
          Length = 1353

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 322  VELRSASWHRGLQVLWR 372
            VE R+ASW  G+  LWR
Sbjct: 993  VETRAASWFNGMSSLWR 1009


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
            ZK370.4a protein.
          Length = 1342

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 322  VELRSASWHRGLQVLWR 372
            VE R+ASW  G+  LWR
Sbjct: 982  VETRAASWFNGMSSLWR 998


>U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical
           protein F20D6.5 protein.
          Length = 362

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 247 CDGVXSHAVSVPERXSSDEYGRRARVELRSASWHRGLQVLWRLFAVVV 390
           C G  S    + E+     Y  RA V+ +S +W    Q L RLF   +
Sbjct: 232 CHGDYSFHNLLYEKHCDGSYKFRAIVDFQSVNWGNAAQDLSRLFVTAM 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,055,813
Number of Sequences: 27780
Number of extensions: 94570
Number of successful extensions: 280
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)