Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1128
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   0.56 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   9.1  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 309 SILVRGASLGNGDSVTXNAIAVLIWVWRXTDHLT 208
           SI  R +++ +GD +T N + + + VWR    +T
Sbjct: 169 SIEARDSAIFDGDFITENNLPLGLEVWRDKVFIT 202


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 372 PPEHLKXAVPRSGAKLNARSTSILVRGASLGNGD 271
           P  HLK A      + N+ +T  ++R  +   GD
Sbjct: 362 PENHLKNAKYLDVIERNSGATDKIIRWCTWSEGD 395


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 372 PPEHLKXAVPRSGAKLNARSTSILVRGASLGNGD 271
           P  HLK A      + N+ +T  ++R  +   GD
Sbjct: 362 PENHLKNAKYLDVIERNSGATDKIIRWCTWSEGD 395


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 372 PPEHLKXAVPRSGAKLNARSTSILVRGASLGNGD 271
           P  HLK A      + N+ +T  ++R  +   GD
Sbjct: 362 PENHLKNAKYLDVIERNSGATDKIIRWCTWSEGD 395


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 360 LKXAVPRSGAKLNARSTSILVRGASL 283
           L+ A P   AKL A  +   + GASL
Sbjct: 33  LEFAFPNGYAKLAAIKSGSYIPGASL 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,698
Number of Sequences: 438
Number of extensions: 1228
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)