Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1128
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60010.1 68418.m07525 ferric reductase-like transmembrane com...    28   2.0  
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    27   3.5  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    27   4.6  

>At5g60010.1 68418.m07525 ferric reductase-like transmembrane
           component family protein similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], respiratory burst oxidase
           homolog from Solanum tuberosum [GI:16549089]; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 839

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = -1

Query: 363 HLKXAVPRSGAKLNARSTSILVRGASLGNGDSVTXNAIAVLIWVWR 226
           HLK  +PRSG K         + G S+  G        A   WV R
Sbjct: 715 HLKPGIPRSGQKYEGSVGGESIGGDSVSGGGGKKFPQRAYFFWVTR 760


>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 28  SIPKFHSSLQDLKQPSLQXPRCLATRV 108
           ++ K  SS +DL    L+ PRCLA+ V
Sbjct: 21  NVSKGKSSSEDLTNVKLESPRCLASNV 47


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 234 VWRXTDHLTTASNGSDSSSRGTEYSTT 154
           +W   DH+T A  GSDS S G+ +  T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,845,888
Number of Sequences: 28952
Number of extensions: 93386
Number of successful extensions: 265
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)