Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1123
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01860.1 68415.m00119 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At5g66300.1 68418.m08359 no apical meristem (NAM) family protein...    27   9.0  

>At2g01860.1 68415.m00119 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 486

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +1

Query: 220 SKSPNSTSRDKIVVETGENRQFIHXNEPPIIVQEHDSQPQEKVCSTTKDVFWDRSKIRLL 399
           +K+  +  R K+  + G N         P+++ + D Q QE V      V W+  +I  +
Sbjct: 42  TKNLRNPRRTKLPPDFGVNLFLRKPKIEPLVIDDDDEQVQESVNDDDDAVVWEPEEIEAI 101

Query: 400 LKL 408
             L
Sbjct: 102 SSL 104


>At5g66300.1 68418.m08359 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751)  [Arabidopsis thaliana];
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 292

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 104 LFRYFSLKMDMNNPPNQSYWFVLREDQSNVILST 205
           +  Y+SL+   N+PP +  W V R  +    + T
Sbjct: 135 IHEYYSLESHQNSPPQEEGWVVCRAFKKRTTIPT 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,977,425
Number of Sequences: 28952
Number of extensions: 264068
Number of successful extensions: 584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)