Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1121
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 185 2e-47
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 185 2e-47
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 185 2e-47
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 185 2e-47
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 184 3e-47
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 184 4e-47
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 183 9e-47
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 182 2e-46
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 181 3e-46
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 93 2e-19
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 90 9e-19
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 90 9e-19
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 83 1e-16
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 83 1e-16
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 83 1e-16
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 83 1e-16
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 63 2e-10
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 63 2e-10
At1g16930.1 68414.m02053 F-box family protein contains F-box dom... 31 0.77
At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase fa... 30 1.0
At1g44900.1 68414.m05144 DNA replication licensing factor, putat... 27 7.2
At5g54710.1 68418.m06813 ankyrin repeat family protein contains ... 27 9.5
At5g51140.1 68418.m06341 pseudouridine synthase family protein l... 27 9.5
At4g16890.1 68417.m02549 disease resistance protein (TIR-NBS-LRR... 27 9.5
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 27 9.5
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 27 9.5
At2g20710.2 68415.m02432 pentatricopeptide (PPR) repeat-containi... 27 9.5
At2g20710.1 68415.m02431 pentatricopeptide (PPR) repeat-containi... 27 9.5
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 27 9.5
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 185 bits (451), Expect = 2e-47
Identities = 84/112 (75%), Positives = 96/112 (85%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQYQDA 590
+F+RVSEQF AMFR ++FLH YTGE + FTEAESNMNDL+SEY QYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
Score = 152 bits (369), Expect = 1e-37
Identities = 67/89 (75%), Positives = 79/89 (88%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR+LTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+D+KNMM A DPRHGRYLT + + G+
Sbjct: 292 QMWDSKNMMCAADPRHGRYLTASAMFRGK 320
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 185 bits (451), Expect = 2e-47
Identities = 84/112 (75%), Positives = 96/112 (85%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQYQDA 590
+F+RVSEQF AMFR ++FLH YTGE + FTEAESNMNDL+SEY QYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
Score = 152 bits (369), Expect = 1e-37
Identities = 67/89 (75%), Positives = 79/89 (88%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR+LTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+D+KNMM A DPRHGRYLT + + G+
Sbjct: 292 QMWDSKNMMCAADPRHGRYLTASAMFRGK 320
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 185 bits (451), Expect = 2e-47
Identities = 84/112 (75%), Positives = 96/112 (85%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQYQDA 590
+F+RVSEQF AMFR ++FLH YTGE + FTEAESNMNDL+SEY QYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
Score = 155 bits (375), Expect = 3e-38
Identities = 69/89 (77%), Positives = 79/89 (88%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYRALTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+DAKNMM A DPRHGRYLT + + G+
Sbjct: 292 QMWDAKNMMCAADPRHGRYLTASAMFRGK 320
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 185 bits (451), Expect = 2e-47
Identities = 84/112 (75%), Positives = 96/112 (85%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQYQDA 590
+F+RVSEQF AMFR ++FLH YTGE + FTEAESNMNDL+SEY QYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
Score = 152 bits (369), Expect = 1e-37
Identities = 68/89 (76%), Positives = 78/89 (87%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR LTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+DAKNMM A DPRHGRYLT + + G+
Sbjct: 292 QMWDAKNMMCAADPRHGRYLTASAMFRGK 320
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 184 bits (449), Expect = 3e-47
Identities = 82/112 (73%), Positives = 97/112 (86%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDIPP G+KMASTF+GN+T+IQ
Sbjct: 318 FRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQE 377
Query: 435 IFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQYQDA 590
+F+RVSEQF AMFR ++FLH YTGE + FTEAESNMNDL+SEY QYQDA
Sbjct: 378 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 429
Score = 146 bits (354), Expect = 1e-35
Identities = 66/89 (74%), Positives = 77/89 (86%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T LRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY +LTVPELT
Sbjct: 233 TMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQ 292
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+DAKNMM A DPRHGRYLT + + G+
Sbjct: 293 QMWDAKNMMCAADPRHGRYLTASAMFRGK 321
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 184 bits (448), Expect = 4e-47
Identities = 82/112 (73%), Positives = 98/112 (87%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ NIQNKNS+YFVEWIPNN K +VCDIPP+GLKMA+TF+GN+T+IQ
Sbjct: 318 FRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAATFVGNSTSIQE 377
Query: 435 IFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQYQDA 590
+F+RVSEQF AMFR ++FLH YTGE + FTEAESNMNDL++EY QYQDA
Sbjct: 378 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 429
Score = 146 bits (355), Expect = 7e-36
Identities = 66/89 (74%), Positives = 77/89 (86%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T LRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY +LTVPELT
Sbjct: 233 TMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQ 292
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+D+KNMM A DPRHGRYLT + I G+
Sbjct: 293 QMWDSKNMMCAADPRHGRYLTASAIFRGQ 321
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 183 bits (445), Expect = 9e-47
Identities = 83/112 (74%), Positives = 96/112 (85%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDI PRGL MASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQYQDA 590
+F+RVSEQF AMFR ++FLH YTGE + FTEAESNMNDL+SEY QYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
Score = 153 bits (372), Expect = 6e-38
Identities = 68/89 (76%), Positives = 79/89 (88%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYRALTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+D+KNMM A DPRHGRYLT + + G+
Sbjct: 292 QMWDSKNMMCAADPRHGRYLTASAMFRGK 320
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 182 bits (442), Expect = 2e-46
Identities = 82/112 (73%), Positives = 97/112 (86%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG++S KEVDEQ+ NIQNKNS+YFVEWIPNN K +VCDI P+GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQYQDA 590
+F+RVSEQF AMFR ++FLH YTGE + FTEAESNMNDL++EY QYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 428
Score = 152 bits (368), Expect = 2e-37
Identities = 69/107 (64%), Positives = 84/107 (78%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY AL+VPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTA 321
QM+DAKNMM A DPRHGRYLT + + G+ K++ + K +
Sbjct: 292 QMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNS 338
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 181 bits (441), Expect = 3e-46
Identities = 82/112 (73%), Positives = 96/112 (85%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDI P GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQYQDA 590
+F+RVSEQF AMFR ++FLH YTGE + FTEAESNMNDL++EY QYQDA
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 428
Score = 151 bits (367), Expect = 3e-37
Identities = 67/89 (75%), Positives = 78/89 (87%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY AL+VPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGE 267
QM+DAKNMM A DPRHGRYLT + + G+
Sbjct: 292 QMWDAKNMMCAADPRHGRYLTASAVFRGK 320
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 92.7 bits (220), Expect = 2e-19
Identities = 37/97 (38%), Positives = 59/97 (60%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
T+S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + +VPE+T
Sbjct: 234 TISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITT 293
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTS 291
+F+ NMM CDPRHG+Y+ + G+ + K + +
Sbjct: 294 SVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNT 330
Score = 61.3 bits (142), Expect = 5e-10
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 401
C +RG + K+V+ +A I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQ 578
I N TA+ +F R+ +F M+ +F+H Y GE + F+EA ++ L +Y +
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 90.2 bits (214), Expect = 9e-19
Identities = 38/104 (36%), Positives = 62/104 (59%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + L+VPE+T
Sbjct: 235 ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNA 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
+F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 VFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQ 578
I N TA+ +F R+ +F M+ +F+H Y GE + F+EA ++ L +Y +
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 90.2 bits (214), Expect = 9e-19
Identities = 38/104 (36%), Positives = 62/104 (59%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + L+VPE+T
Sbjct: 235 ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNA 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
+F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 VFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQ 578
I N TA+ +F R+ +F M+ +F+H Y GE + F+EA ++ L +Y +
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 60.5 bits (140), Expect = 8e-10
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQ 578
I N+T++ +F R+ +F M+ +F+H Y GE + F+EA ++ L +Y +
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP 380
C +RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPP 360
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 60.5 bits (140), Expect = 8e-10
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQ 578
I N+T++ +F R+ +F M+ +F+H Y GE + F+EA ++ L +Y +
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 60.5 bits (140), Expect = 8e-10
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRAESFLHXYTGEVWMKWSFTEAESNMNDLISEYPQ 578
I N+T++ +F R+ +F M+ +F+H Y GE + F+EA ++ L +Y +
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLT-SRGAQQYRALTVPELTL 180
MS TT LR+PG +N DL L +++P PR HF G+ PLT R A R TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMR 295
Query: 181 QMFDAKNMMVACDPRH-----GRYLTVATISGGE 267
++ KN+MV+ R+ +Y+++ I GE
Sbjct: 296 RLLQTKNIMVSSYARNKEASQAKYISILNIIQGE 329
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLT-SRGAQQYRALTVPELTL 180
MS TT LR+PG +N DL L +++P PR HF G+ PLT R A R TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMR 295
Query: 181 QMFDAKNMMVACDPRH-----GRYLTVATISGGE 267
++ KN+MV+ R+ +Y+++ I GE
Sbjct: 296 RLLQTKNIMVSSYARNKEASQAKYISILNIIQGE 329
Score = 37.9 bits (84), Expect = 0.005
Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Frame = +3
Query: 123 ADVARSSTVSSFNCTRADAANVRRQKHDGRV*SSTREVFDRCDDFRGRMSMKEVDEQLAN 302
A+V R +TV N+ + +S + + +G + +V E L
Sbjct: 282 ANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQR 341
Query: 303 IQNKNSTYFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNTTAIQTIFKRVSEQFVAMF 473
I+ + F+EW P + ++A+ P +++ + + T+I+ +F + Q+ +
Sbjct: 342 IRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYDKLR 401
Query: 474 RAESFLHXY 500
+ ++FL Y
Sbjct: 402 KKQAFLDNY 410
>At1g16930.1 68414.m02053 F-box family protein contains F-box domain
Pfam:PF00646
Length = 449
Score = 30.7 bits (66), Expect = 0.77
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +3
Query: 345 NNCKIAVCDIPPRGLKMASTFIGNTTAIQTIFKRVSEQFVAMFRAESFLHXYTGEVW--M 518
++ KIA+ GL S + ++ +Q I + + F S LH Y + W M
Sbjct: 279 DSSKIAMLGKFLTGLSTVSEMVISSDTLQVIHDYCKMEQLPQFSNLSRLHAYFEDTWWEM 338
Query: 519 KWSFTEAESNMNDLISEYPQYQD 587
+F E+ N++ L+ E+ + D
Sbjct: 339 LPTFLESFPNLHSLVMEFDCFPD 361
>At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to SP|Q9ZWQ9 Flavonol synthase
(EC 1.14.11.-) {Citrus unshiu}; contains Pfam profile
PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 364
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 111 RGVEMQARKRHHVHSQLPQISVQLSRKP 28
RGV + + K HH+H Q+P I + KP
Sbjct: 39 RGVVVSSLKTHHLHHQIPVIDLSKLSKP 66
>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
similar to DNA replication licensing factor MCM2 from
{Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 928
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 210 RV*SSTREVFDRCDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAV 365
R+ + RE R D+ R ++ K D L ++ KN +E++PN C + +
Sbjct: 200 RIQGTLREWVMR-DEVRRFIAKKFKDFLLTYVKPKNENGDIEYVPNKCSLEI 250
>At5g54710.1 68418.m06813 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 598
Score = 27.1 bits (57), Expect = 9.5
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Frame = +3
Query: 192 RQKHDGRV*SSTREVFDRCDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCD 371
R ++G SS D + R + KE + ++QN +T + + C
Sbjct: 384 RNTNNGEKLSSESRAMDLLREGRDPRN-KEREMHSESLQNARNTITIVAVLIASVAFTCG 442
Query: 372 I-PPRGLKMASTFIGNTTAIQTI-FKRVS-EQFVAMFRAESFL 491
I PP G+ FIG TA +T+ FK S +A+F + S +
Sbjct: 443 INPPGGVHQDGPFIGKATAGRTLAFKIFSVANNIALFTSLSIV 485
>At5g51140.1 68418.m06341 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 395
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -3
Query: 425 GRRVTNEGRSHFK-TPRRY----VTHGNLAVIGYPLDKIRAVFVLNIRQLLVNFFHRHSP 261
G+ + + FK PR Y V G + V G + + +++ Q + +F HRH P
Sbjct: 73 GKTIVDLFADEFKGRPRDYYVGAVKSGRIKVDG---EIVPVSYIVKSSQKITHFLHRHEP 129
Query: 260 PEIVATVKYL 231
P ++ V L
Sbjct: 130 PVMIDDVVIL 139
>At4g16890.1 68417.m02549 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1301
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -1
Query: 574 GYSDIKSFMLDSASVKLHFIHTSPVYXCKKLSALNIATNCSDTLLNMVCMAVVLPMKV 401
G S ++SF L S S+K ++ + + +++ L+ ATN + LN V LP +
Sbjct: 919 GCSSLRSFPLISESIKWLYLENTAI---EEIPDLSKATNLKNLKLNNCKSLVTLPTTI 973
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 219 SSTREVFDRCDDFRGRMSMKEVDEQLANIQNKNSTYF 329
SS ++V DDF G + M EVD L N + T F
Sbjct: 173 SSAKDVGMCEDDFYGNLGMDEVDMALENYEELFGTAF 209
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 219 SSTREVFDRCDDFRGRMSMKEVDEQLANIQNKNSTYF 329
SS ++V DDF G + M EVD L N + T F
Sbjct: 173 SSAKDVGMCEDDFYGNLGMDEVDMALENYEELFGTAF 209
>At2g20710.2 68415.m02432 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 395
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 283 LTSNWRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSLVTRRPYRPY 438
L WR+ T T L+ GY + ++ + V KW R V++ +RP+
Sbjct: 281 LVQKWRVEDTSTWERLALGYKMAGKME-----KAVEKWKRAIEVSKPGWRPH 327
>At2g20710.1 68415.m02431 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 490
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 283 LTSNWRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSLVTRRPYRPY 438
L WR+ T T L+ GY + ++ + V KW R V++ +RP+
Sbjct: 376 LVQKWRVEDTSTWERLALGYKMAGKME-----KAVEKWKRAIEVSKPGWRPH 422
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 27.1 bits (57), Expect = 9.5
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = -3
Query: 539 CLRETPFHPYLTSVXVQEAFRPKHSHELLRHPLEYGLYGRRVTNEGRSHFKTPRRYVTHG 360
CL P H V +++ FR KHS+ + E G V ++ ++H KT T G
Sbjct: 116 CLHHNPCHALGDLVGIKKHFRRKHSNH-KQWVCERCSKGYAVQSDYKAHLKT---CGTRG 171
Query: 359 NLAVIGYPLDKIRAVFVLNIRQLLVNFFHRH--SPPEIVATV 240
+ G ++ + F+ + HR PP+ TV
Sbjct: 172 HSCDCGRVFSRVES-FIEHQDNCSARRVHREPPRPPQTAVTV 212
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,656,745
Number of Sequences: 28952
Number of extensions: 279335
Number of successful extensions: 900
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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