Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1120
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   2.1  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   2.7  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   6.3  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   6.3  

>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 49  NYITIRPKIFFFEIYNGSGFSQYRPTAIIFLGTRVIVPSTSIGS 180
           N+  +R  +  FE YN    +  RP+ I  L  + +   +S+ S
Sbjct: 770 NHAYLRSHVSLFETYNDDEATSLRPSPIRLLSQKSLASVSSVSS 813


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 293 AQNEIDIVXARFRNGDPVYKHPMIPGYEGFSG 388
           +  E  I  A   N D  Y  P IP Y GFSG
Sbjct: 329 SDKEFSIWTATECNNDCGYYLPGIPAYHGFSG 360


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 80  FLKFTMALDLVSIAQPQLY 136
           FLKFT+ LDL  I   +LY
Sbjct: 831 FLKFTVFLDLKGIENSELY 849


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 114 LTKSRAIVNFKKKYFWPNSYV 52
           LTKS +IV F+K YF   +Y+
Sbjct: 333 LTKSSSIVAFEKLYFLNKNYL 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,901
Number of Sequences: 5004
Number of extensions: 37258
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)