Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1120
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)             55   3e-08
SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)               35   0.032
SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)                    27   6.5  
SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)                       27   8.6  
SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)               27   8.6  

>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
          Length = 332

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
 Frame = +3

Query: 114 VSPNRNYIPGYTGHCPEYKYRIGDTYGSXTHKXLLDPSVQHSERLVLPIXRPM------T 275
           ++P+  +IPGY G+CP++KY+IG+T+G  T   L D SV +S + VL    P       T
Sbjct: 43  MTPDPYHIPGYCGYCPQFKYQIGETFGRTTSCLLTDNSVAYSGKPVLSDIEPQVPPKADT 102

Query: 276 XRSTVQHR 299
            R T+++R
Sbjct: 103 RRDTIKNR 110



 Score = 31.1 bits (67), Expect = 0.53
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 123 NRNYIPGYTGHCPEYKYRIGDTYGSXT 203
           N   +P +TGH P  K+R G T+G  T
Sbjct: 297 NTGLVPHFTGHVPGEKFRYGMTFGYST 323



 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 117 SPNRNYIPGYTGHCPEYKYRIGDTYGSXTHKXLL 218
           +P +++  GY+G  P Y+  +G+ Y   T+K L+
Sbjct: 227 NPKKHHKSGYSGFVPRYRGLMGEGYPVLTNKALI 260



 Score = 29.1 bits (62), Expect = 2.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 135 IPGYTGHCPEYKYRIGDTYGSXTHKXLLD 221
           +PGYTG+ P+ ++  G++Y   +   + D
Sbjct: 124 VPGYTGYIPKAEHYYGNSYAETSRSAIAD 152


>SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 132 YIPGYTGHCPEYKYRIGDTYGSXTHKXLLDPSVQHSER 245
           ++PGY G  P+ ++R GDT+G+ T K   D      +R
Sbjct: 19  HLPGYAGFRPQQQWRYGDTFGNDTAKYFQDKRTAQLKR 56


>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
          Length = 834

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 141 GYTGHCPEYKYRIGDTYGSXTHK 209
           GY G+CP+ KY  G TYG  T K
Sbjct: 634 GYRGYCPQLKYECGHTYGIATDK 656


>SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1059

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 222  PSVQHSERLVLPIXRPMTXRSTVQHRT 302
            PSV H+ RL +P  R  T  +T+Q  T
Sbjct: 951  PSVNHTSRLQIPTSRLQTHTTTIQPST 977


>SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)
          Length = 465

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 391 MTRKPFVSWYHGMLVNGIAITETCVHDVYLVLCWTVD 281
           + ++PF+  YH +LVN +  +  C + V L++  T++
Sbjct: 210 LNKRPFI--YHQLLVNEVHASVHCFNRVILIISGTIN 244


>SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)
          Length = 212

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 353 ACKRDRHYGNVRXRCLSRSVLDG 285
           +C  D+H+   R  C+S+ ++DG
Sbjct: 148 SCPMDKHHVETREACVSKGLIDG 170


>SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
          Length = 928

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 63  SAKNIFF*NLQWLWI*SVSPNRNYIPGYTG 152
           +A+N    NL W+ +  + P    IPG+TG
Sbjct: 596 AARNSRIKNLLWILMRRIDPEHQTIPGWTG 625


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,217,269
Number of Sequences: 59808
Number of extensions: 276554
Number of successful extensions: 687
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)