Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1120
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36850.1 68418.m04415 hypothetical protein similar to At1g277...    31   0.33 
At1g27780.1 68414.m03399 Ulp1 protease family protein similar to...    31   0.33 
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    30   1.00 
At2g05562.1 68415.m00589 hypothetical protein                          30   1.00 
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P...    28   3.0  
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P...    28   4.0  
At4g21370.1 68417.m03088 S-locus protein kinase, putative simila...    27   5.3  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    27   7.0  

>At5g36850.1 68418.m04415 hypothetical protein similar to At1g27780,
           At2g05560, At4g05280, At3g24385, At3g42590, At2g12110,
           At2g12100
          Length = 231

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 106 FSQYRPTAIIFLGTRVIVPSTSIGSAIRMARQH--TRXFSIRACSI 237
           F+   PTA+ + G RV+    +I  AIR+ ++H   R  +  AC+I
Sbjct: 86  FAANNPTAVYYEGIRVLTHERNINGAIRLLQRHAPVRANATLACAI 131


>At1g27780.1 68414.m03399 Ulp1 protease family protein similar to
            At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
            At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
            At1g27790, At1g34740, At5g36850, At3g42730, At1g52020,
            At3g24390, At4g05280, At1g25886, At4g03300; contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain
          Length = 1468

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 106  FSQYRPTAIIFLGTRVIVPSTSIGSAIRMARQH--TRXFSIRACSI 237
            F+   PTA+ + G RV+    +I  AIR+ ++H   R  +  AC+I
Sbjct: 1323 FTANNPTAVYYEGIRVLTHERNINGAIRLLQRHAPVRANATLACAI 1368


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
            At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
            At1g25886, At4g03300
          Length = 1463

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 106  FSQYRPTAIIFLGTRVIVPSTSIGSAIRMARQH--TRXFSIRACSI 237
            F+   PT + + G RV+    +I  AIR+ ++H   R  +  AC+I
Sbjct: 1127 FAANNPTVVYYEGIRVLTHERNINGAIRLLQRHAPVRANATLACAI 1172


>At2g05562.1 68415.m00589 hypothetical protein
          Length = 264

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 106 FSQYRPTAIIFLGTRVIVPSTSIGSAIRMARQH--TRXFSIRACSI 237
           F+   PT + + G RV+    +I  AIR+ ++H   R  +  AC+I
Sbjct: 119 FAANNPTTVYYEGIRVLTHERNINGAIRLLQRHAPVRANATLACAI 164


>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
            At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
            At1g25886, At4g03300
          Length = 1312

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 121  PTAIIFLGTRVIVPSTSIGSAIRMARQH 204
            PTA+ + G RV+    +I  AIR+ ++H
Sbjct: 1183 PTAVYYEGIRVLTHERNINGAIRLLQRH 1210


>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
            At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
            At1g25886, At4g03300
          Length = 1383

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 106  FSQYRPTAIIFLGTRVIVPSTSIGSAIRMARQH--TRXFSIRACSI 237
            F+   PTA+ +   RV+    +I  AIR+ ++H   R  +  AC+I
Sbjct: 1238 FAANNPTAVYYECIRVLTHEQNINGAIRLLQRHAPVRANATLACAI 1283


>At4g21370.1 68417.m03088 S-locus protein kinase, putative similar
           to SRKa [Arabidopsis lyrata] gi|13620927|dbj|BAB40986;
           contains Pfam domains PF00954: S-locus glycoprotein
           family, PF00069: Protein kinase domain and PF01453:
           Lectin (probable mannose binding)
          Length = 844

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 244 GWCYRXNGR*LXDLPSSTERDRHR 315
           G+C R +     D  SSTERD HR
Sbjct: 808 GYCVRRSSLDTDDSSSSTERDNHR 831


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 169 SIGSAIRMARQHTRXFSIRACSIQRGW 249
           SIGSA R  RQ T+  S+R    Q  W
Sbjct: 234 SIGSACRRLRQLTKNESVRKMVCQNAW 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,798,948
Number of Sequences: 28952
Number of extensions: 188550
Number of successful extensions: 415
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)