Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1119
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68333-2|CAA92722.1| 149|Caenorhabditis elegans Hypothetical pr... 31 0.93
Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical pr... 30 1.2
U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic nucleoti... 30 1.2
U53333-3|AAA96156.1| 108|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z22177-8|CAB76721.1| 136|Caenorhabditis elegans Hypothetical pr... 28 6.6
U00035-4|AAA50646.2| 482|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 27 8.7
AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical ... 27 8.7
AC006714-14|AAK29720.2| 264|Caenorhabditis elegans F-box a prot... 27 8.7
>Z68333-2|CAA92722.1| 149|Caenorhabditis elegans Hypothetical
protein C05C12.5 protein.
Length = 149
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 170 GAK--SSLPLVCLVPRDGASSEARTKPRPA*LGPQLKMISSCSTRSTS 307
GAK SLP +VP + SE P P + PQL S S S+S
Sbjct: 38 GAKPSDSLPDRTIVPSPSSQSERSCSPEPRIVAPQLSAYSGSSAASSS 85
>Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +1
Query: 262 PTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRRPLITFPMTQEDCKHFNLAXKYKINQQI 441
P +++ F LLD K R L P R P + + + + L + ++
Sbjct: 43 PRSEDSFDLLDPANASKEPSASTRPLPYPPTRPPEVVIQIDEVESPILGLIDETDDHE-- 100
Query: 442 LDGYLDPGESISAPSV 489
LDG LDP S A S+
Sbjct: 101 LDGRLDPASSFDANSL 116
>Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +1
Query: 262 PTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRRPLITFPMTQEDCKHFNLAXKYKINQQI 441
P +++ F LLD K R L P R P + + + + L + ++
Sbjct: 43 PRSEDSFDLLDPANASKEPSASTRPLPYPPTRPPEVVIQIDEVESPILGLIDETDDHE-- 100
Query: 442 LDGYLDPGESISAPSV 489
LDG LDP S A S+
Sbjct: 101 LDGRLDPASSFDANSL 116
>U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 800
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +1
Query: 262 PTTQNDFQLLDEEYIRKNFKLPQRALYLDPYRRPLITFPMTQEDCKHFNLAXKYKINQQI 441
P +++ F LLD K R L P R P + + + + L + ++
Sbjct: 43 PRSEDSFDLLDPANASKEPSASTRPLPYPPTRPPEVVIQIDEVESPILGLIDETDDHE-- 100
Query: 442 LDGYLDPGESISAPSV 489
LDG LDP S A S+
Sbjct: 101 LDGRLDPASSFDANSL 116
>U53333-3|AAA96156.1| 108|Caenorhabditis elegans Hypothetical
protein F36A4.11 protein.
Length = 108
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -2
Query: 374 KVIRGRLYGSKYNALCGNLKFFLMYSSSSNWKSF*VVGPAMQAGALSWLPKMLHRE 207
K++ GR G Y +FL ++S WK GPA GA SW ++H +
Sbjct: 17 KIVTGRSTGFGYVRGSWFFFYFLKNFTNSVWKLGSPTGPAGTPGATSW-QNLVHND 71
>Z22177-8|CAB76721.1| 136|Caenorhabditis elegans Hypothetical
protein ZK512.9 protein.
Length = 136
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 624 APVAF*WFDYAXDICXHXQEAVICIL 547
AP AF + +A D C H + + C+L
Sbjct: 107 APCAFSYLAHAQDYCIHSRHGITCLL 132
>U00035-4|AAA50646.2| 482|Caenorhabditis elegans Hypothetical
protein R01H2.4 protein.
Length = 482
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 360 TSIRVQIQRPLWQLKVFPDVLLVEQLEIILSCGPSYAGRGF-VLASEDAPSRGT 202
TS ++ I P W+ K FP + + L ++ + GF LA EDA T
Sbjct: 311 TSPKMSIYLPHWKTKDFPSSRISQHLVATMNLNSLFVAGGFGDLAVEDAVPSAT 364
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 122 QFCKMTSCCTCEGHHSGAKSSLPLVCLVPRDGASSEARTK 241
++C S C C G ++G ++ VCL PR + + K
Sbjct: 1313 RYC-FPSGCQCSGAYTGTQACANSVCLFPRTSCCAPYKKK 1351
>AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical
protein C39F7.2 protein.
Length = 765
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +2
Query: 134 MTSCCTCEGHHSGAKSSLPLVCLVPRDGASSEARTKPRPA*LGPQLKMISSCSTRSTSGK 313
M+ C + G H K S V G RT + +GP L + + T STSG
Sbjct: 83 MSLCVSDNGDHESDKLS---VVSETDSGVVGCGRTSRPSSIIGPPLSRLHNILTPSTSGV 139
Query: 314 TLSCH 328
L C+
Sbjct: 140 QLVCN 144
>AC006714-14|AAK29720.2| 264|Caenorhabditis elegans F-box a protein
protein 77 protein.
Length = 264
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 257 LGPQLKMISSCSTRSTSGKTLSCH 328
L LK + +C+TRS K LSCH
Sbjct: 102 LASTLKNLENCTTRSLLLKDLSCH 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,444,938
Number of Sequences: 27780
Number of extensions: 299207
Number of successful extensions: 773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -