Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1113
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 219 4e-58
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 122 4e-29
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 118 1e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 68 1e-12
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 27 2.0
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 27 3.4
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 3.4
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 26 6.0
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 6.0
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom... 25 7.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 219 bits (534), Expect = 4e-58
Identities = 107/195 (54%), Positives = 138/195 (70%), Gaps = 3/195 (1%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLXM 181
+G+TT RFPG+LN+DLRKLAVNMVPFPRLHF+ GFAPL + G+ ++A++VPELT M
Sbjct: 234 AGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQM 293
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSKLANIQNKKQHVFVEWIPNNCKIAV 361
FDA NMMVA DPRHGRYLTVA +FRG+ K++ ++ ++Q K FVEWIP+N AV
Sbjct: 294 FDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAV 353
Query: 362 CDIPPRGLKMASTSLVTRRPYRPYSRGCLSSSWLCLGGKLLALVHW---*XYDEMEFTEA 532
C +PP+ LKM++T + + R L + + + A +HW DEMEFTEA
Sbjct: 354 CSVPPKDLKMSATFIGNSTSIQEIFRR-LGDQFSAM-FRRKAFLHWYTGEGMDEMEFTEA 411
Query: 533 ESNMNDLISEYQQYQ 577
ESNMNDL+SEYQQYQ
Sbjct: 412 ESNMNDLVSEYQQYQ 426
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 122 bits (295), Expect = 4e-29
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 9/199 (4%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLXM 181
S IT LRF G LN DL + N+VP+PR+HF +AP+ S + + +V E+T
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQC 295
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSKLANIQNKKQHVFVEWIPNNCKIAV 361
F+ N MV CDPR GRY+ ++RG+ + + + + + I+ K+ FV+W P KI +
Sbjct: 296 FEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGI 355
Query: 362 CDIPPRGLKMASTSLVTRRPYRPYSRGCLSSSWLCLGGKL------LALVHW---*XYDE 514
CD PP+ ++ + + V R + ++ +W L K A VHW +E
Sbjct: 356 CDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEE 415
Query: 515 MEFTEAESNMNDLISEYQQ 571
EF+EA ++ L +Y++
Sbjct: 416 GEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 118 bits (283), Expect = 1e-27
Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 9/199 (4%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLXM 181
S IT LRF G LN DL + N+VP+PR+HF ++P+ S + + +V E+T
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQC 299
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSKLANIQNKKQHVFVEWIPNNCKIAV 361
F+ N MV CDPR GRY+ ++RG+ + + + + + +I++++ FV+W P KI +
Sbjct: 300 FEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGI 359
Query: 362 CDIPPRGLKMASTSLVTRRPYRPYSRGCLSSSWLCLGGKL------LALVHW---*XYDE 514
C PP+ + + + V R + ++ +W L K A VHW +E
Sbjct: 360 CYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEE 419
Query: 515 MEFTEAESNMNDLISEYQQ 571
EF+EA ++ L +Y++
Sbjct: 420 GEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 67.7 bits (158), Expect = 1e-12
Identities = 35/129 (27%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRAL---TVPELT 172
S TT LR+PG +N DL + +++P PR HF + P T++ ++ +A+ TV ++
Sbjct: 237 SASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVM 296
Query: 173 LXMFDAKNMMVACDP-RHGRYLTVATIFRGECL*KKLTSKLANIQNKKQHVFVEWIPNNC 349
+ KN MV+ +P + ++++ I +GE + L I+ ++ F+ W P +
Sbjct: 297 RRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASI 356
Query: 350 KIAVCDIPP 376
++A+ P
Sbjct: 357 QVALSKKSP 365
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 368 CHTRQSCSYWVSTRQIRAVFCSE 300
CHT+ S Y+VS+ RAVF +
Sbjct: 117 CHTQDSICYYVSSPSKRAVFTGD 139
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 227 RYLTVATIFRGECL*KKLTSKLANIQNKKQHVFVEWIPN 343
+Y+ ++F G + + T NI N + EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +2
Query: 101 TPGFAPLTSRGAQQYRALTVPELTLXMFDAKNMMVACDPRHGRYLTVATIFRGECL*KKL 280
TP A ++ Y A+++ +L + M + +GRYL G C+
Sbjct: 446 TPILAVASNSIVSMYNAISLQQLAVFMRHTAPVSALSFSHNGRYLATGDTSGGVCIWSCK 505
Query: 281 TSKL 292
T+KL
Sbjct: 506 TAKL 509
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -3
Query: 497 SVPVQEAFRLNIATNCSDTLLNMVCMAVVLPMKSK--PF*DPSEVCHTRQSCSYWVSTRQ 324
S+P + +LN +TL + M V+L M SK F + S+V ++ + W
Sbjct: 203 SMPTKYIAKLNSVGTYLNTLFLFISMIVILAMSSKNHGFNETSKVWSHIENYTDWPDGFA 262
Query: 323 IRAVFC 306
I FC
Sbjct: 263 ILMSFC 268
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 217 STREVFDRCDDIQGRMSMKEVDEQTGEYSEQK 312
STR DR D G S++E+D+Q E+ ++
Sbjct: 277 STRYHQDRPDKRHGTYSLEEIDKQRKEFENRQ 308
>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 294 ASLLVNFFHRHSPLNIVATVKYLP 223
+SLL+NF+HR+ PL + V P
Sbjct: 315 SSLLLNFWHRNQPLVLPPKVGATP 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,978
Number of Sequences: 5004
Number of extensions: 52094
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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