Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1113
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.30 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.52 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 194 FWRRTXAAXARVQLKLDTVELLATSAAQSQ 105
           FW +  AA ARV L + ++  L+T  A+SQ
Sbjct: 266 FWIKPEAAPARVTLGVTSLLTLSTQHAKSQ 295


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 194 FWRRTXAAXARVQLKLDTVELLATSAAQSQ 105
           FW +  A  ARV L + ++  LAT   QSQ
Sbjct: 235 FWIKPEAIPARVTLGVTSLLTLATQNTQSQ 264


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 525 VNSISSYXHQCTSARSF 475
           VN ++SY   C S R+F
Sbjct: 291 VNIVTSYCKTCISGRAF 307


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 240 TVKYLPCRGSHATIMFLASNIXSVSSGT 157
           T KY+     +A  + LAS I S S+GT
Sbjct: 2   TAKYVFTTLINAAFLCLASTILSESAGT 29


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 194 FWRRTXAAXARVQLKLDTVELLATSAA 114
           FW    A  ARV L + T+  +AT  +
Sbjct: 263 FWLDQSAVPARVSLGVTTLLTMATQTS 289


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 194 FWRRTXAAXARVQLKLDTVELLATSAA 114
           FW    A  ARV L + T+  +AT  +
Sbjct: 263 FWLDQSAVPARVSLGVTTLLTMATQTS 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,917
Number of Sequences: 438
Number of extensions: 3621
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)