Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1107
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   2.1  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    25   4.8  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    24   8.4  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    24   8.4  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    24   8.4  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 246 PNSFRYPTFKLTSRTMIPVRAHTKPCLRLAYKLDPTKSFVMV 371
           PN F   T    S+T IP + HTK  LRL+   D  +S + V
Sbjct: 759 PNGF---TTDQHSQTFIPSQTHTKLDLRLSDVTDSVRSRINV 797


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 208 PRVQQFFLGH*PLLTLAMSQLSAGPVPDIRQ 116
           PR+  F +G  PL  +  S   A  VP++ Q
Sbjct: 261 PRLHFFMVGFAPLAAIGSSSFQAVSVPELTQ 291


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 254 TIWSLRSVPPFITEPAAR 201
           T + LRS PPF+T+ A R
Sbjct: 331 TYYLLRSQPPFLTDMALR 348


>SPAC17H9.07 |||signal recognition particle subunit Srp21
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 3  FLERARKFFTGTGRRSLAFYKTKKCRIKFST 95
          +L+   +FFT +   + A+ KT K  IK+ T
Sbjct: 3  YLQTVNEFFTQSKSLTEAYPKTTKLSIKYRT 33


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 127 DIRQCVSKNNRVENFIRHFFV 65
           ++ QC SK  RV   +RH+F+
Sbjct: 47  NVYQCPSKGERVYLALRHWFI 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,053
Number of Sequences: 5004
Number of extensions: 36692
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)