Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1107
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1498 + 26995209-26995752,26995945-26996513                       28   3.5  
10_05_0027 + 8286522-8286542,8286739-8287296,8287378-8287501,828...    27   4.6  

>07_03_1498 + 26995209-26995752,26995945-26996513
          Length = 370

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +3

Query: 180 CPKKNC*TRGRLCDER----WHTP*APNSFRYPTFKLTS 284
           CP+      GR C  R    W TP  PNSF Y + K+ S
Sbjct: 258 CPQLANLGSGRFCIARFFHTWTTPMEPNSFGYDSIKVHS 296


>10_05_0027 +
           8286522-8286542,8286739-8287296,8287378-8287501,
           8289499-8289629
          Length = 277

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 311 VSPHRYHCSACQFKGGIAETIWSLRSVPPFITE 213
           +S HR   S    +GG AET+ ++  VPP  TE
Sbjct: 2   LSLHRSLISPSLERGGRAETLTAIAGVPPLRTE 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,039,509
Number of Sequences: 37544
Number of extensions: 246471
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)