Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1107
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_8059| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.3  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 27   8.3  

>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1879

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 257 ETIWSLRSVPPFITEPAARSTVFFRTLTSVDVGNVAAQC 141
           E IW+ R +P  + + AA+  V+ R L    +  + A+C
Sbjct: 278 EAIWTRRPLPERMLDAAAKRVVYLRELRLAQMERLMAEC 316


>SB_8059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 243 APNSFRYPTFKLT-SRTMIPVRAHTKPCLRLAYKLDPTKSFVM 368
           A   F Y  FKLT +R ++PVR  +  C    YK   T   ++
Sbjct: 22  ASGLFVYFIFKLTPTRDVVPVRRSSGACFNNGYKYTRTVEHIL 64


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 267  TFKLTSRTMIPVRAHTKPCL 326
            T K++SRT +P+ +HT+  L
Sbjct: 2052 TIKISSRTRVPIHSHTRDVL 2071


>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 208 AGSVMNGGTLRRLQIVSAIPPL 273
           AGS++NG   R LQ+  + PP+
Sbjct: 401 AGSMINGAVARTLQMTGSTPPV 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,720,812
Number of Sequences: 59808
Number of extensions: 284993
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)