Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1107
         (419 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ...    28   3.0  
At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329...    27   6.8  
At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329...    27   6.8  
At3g01670.1 68416.m00098 expressed protein                             27   6.8  

>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase GB:CAA09697
           GI:4138282 [Nicotiana tabacum]
          Length = 1107

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -1

Query: 305 PHRYHCSACQFKGGIAETIWSLRSVPPFITEP 210
           PH   CS     G I    W    VPP  +EP
Sbjct: 788 PHPNECSGSDLDGDIYFVCWDQELVPPRTSEP 819


>At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 442

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 148 AATLPTSTEVSVLKKTVERAAGSVMNGGTLRRLQIVSAIPPLN*QAEQ 291
           AA LPT  +  ++ + +   + +V++GG  + L  VS  PPLN   E+
Sbjct: 21  AAKLPT--QKWIISQQIRVFSATVISGGGKKPLAKVSVKPPLNVATEK 66


>At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 440

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 148 AATLPTSTEVSVLKKTVERAAGSVMNGGTLRRLQIVSAIPPLN*QAEQ 291
           AA LPT  +  ++ + +   + +V++GG  + L  VS  PPLN   E+
Sbjct: 21  AAKLPT--QKWIISQQIRVFSATVISGGGKKPLAKVSVKPPLNVATEK 66


>At3g01670.1 68416.m00098 expressed protein
          Length = 822

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 17  KKVLHRNRPPVFSVLQDKKMSNKI 88
           K+  HRN  P+FS+  D+ M++++
Sbjct: 123 KQAFHRNGRPMFSLSDDRVMADRV 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,593,498
Number of Sequences: 28952
Number of extensions: 193907
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)