Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1104
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 80 2e-16
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 79 3e-16
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 1.3
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 26 2.2
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 26 2.9
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 26 2.9
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 5.1
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 6.7
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 6.7
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 6.7
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 6.7
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 24 8.9
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 79.8 bits (188), Expect = 2e-16
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +1
Query: 73 MDVNVALQEVLKTALIHGGLVHGLHEXAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 252
+ V AL+EVLK AL+H GL G+ E +KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 27 VSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 86
Score = 77.4 bits (182), Expect = 9e-16
Identities = 31/55 (56%), Positives = 43/55 (78%)
Frame = +3
Query: 252 TQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLXD 416
++ PL+KV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L +
Sbjct: 87 SETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKLLE 141
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 79.0 bits (186), Expect = 3e-16
Identities = 36/60 (60%), Positives = 46/60 (76%)
Frame = +1
Query: 73 MDVNVALQEVLKTALIHGGLVHGLHEXAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 252
+ V +L+EVLK AL+H GL G+ E +KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 30 LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 89
Score = 78.6 bits (185), Expect = 4e-16
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +3
Query: 252 TQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 410
+Q PLVKV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L
Sbjct: 90 SQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 398 RWSFLAEIFDDNTGAADNFPCLAIL 324
RW +LA +F N A N P + +L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLL 281
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 300 ILQAFCCCQP*PVESVFVAQSLNKFLVCGFITVLSQN 190
+L F C P PV+ VF+ +N + GF+ + N
Sbjct: 421 MLLTFDKCAPVPVKRVFLLNRVNIAYISGFVPLFIYN 457
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.8 bits (54), Expect = 2.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 34 VEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEXA 156
+E+ P LS D + + VL L+HGG +HG H A
Sbjct: 445 LEIDLEPYLS-ETADKSESHVYVLHGVLVHGGDLHGGHYYA 484
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.8 bits (54), Expect = 2.9
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +1
Query: 94 QEVLKTALIHGGLVHGLHEXAKALDKRQAVLCVLAENCDEAAYKKLVQA-LCNEHRFHWS 270
+E + A G V L + + L + +L +++ D A K+ V++ N + HWS
Sbjct: 194 RENARLAAEQGIQVSTLKDYVQYLPDSEILLDMVSAIADAIASKEQVESGTKNVYELHWS 253
Query: 271 RLTTTKSLENGLVSARLTRMARQGKLSAAPVL 366
++NG V L ++ L + V+
Sbjct: 254 MSRLLACIKNGEVHKGLINISTYNYLEGSVVV 285
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.0 bits (52), Expect = 5.1
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 366 QHRSSRQFSLPCHPCQSCRD-QPILQAF 286
+ ++ +QF LP PCQ+ + +PI+++F
Sbjct: 226 KRKALKQFPLPPDPCQALANLRPIVKSF 253
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 6.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -1
Query: 223 CMRLHHSSQPKHIVLLASCQEL*RXREDRAQDHHGLKLSLAPLAVLHSRPCCYPT 59
C+ S +HIV A L +D +DH G+ L ++P V + P+
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPS 571
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 130 DHHGLKLSLAPLAVLHSRPC 71
D GL ++ L+++HSRPC
Sbjct: 529 DEMGLGKTIEVLSLIHSRPC 548
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 6.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -1
Query: 223 CMRLHHSSQPKHIVLLASCQEL*RXREDRAQDHHGLKLSLAPLAVLHSRPCCYPT 59
C+ S +HIV A L +D +DH G+ L ++P V + P+
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPS 571
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 340 GKLSAAPVLSSKISARKLQR 399
G S+A +L+ K+ ARKLQR
Sbjct: 28 GTSSSANILNGKLLARKLQR 47
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 24.2 bits (50), Expect = 8.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 237 GSVQRTQIPLVKVDNNKKLGEWAGL 311
GSVQRT ++ ++ N KL W GL
Sbjct: 383 GSVQRTIKEIIHIEGNWKL--WKGL 405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,284
Number of Sequences: 5004
Number of extensions: 34772
Number of successful extensions: 132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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