Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1104
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    77   7e-15
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    28   2.6  
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    27   6.0  
Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z82062-4|CAB04888.1|  266|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 76.6 bits (180), Expect = 7e-15
 Identities = 41/81 (50%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
 Frame = +1

Query: 19  MADVEVEVPTNPI-LSGNNMDVNVALQEVLKTALIHGGLVHGLHEXAKALDKRQAVLCVL 195
           M+D   +V   P  ++   MD   AL+ VL+ A    GL  GLHE  KALDKR+A  CVL
Sbjct: 1   MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60

Query: 196 AENCDEAAYKKLVQALCNEHR 258
           AENCDE  Y KLV+ LC EH+
Sbjct: 61  AENCDEPQYVKLVETLCAEHQ 81



 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 31/60 (51%), Positives = 42/60 (70%)
 Frame = +3

Query: 255 QIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLXDYLKSSS 434
           QIPL+KV + K +GE+ GLCK DK+GKARK+VGCS  V+ ++G E     +L DY  S +
Sbjct: 81  QIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDYFASKN 140


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 225 LVCGFITVLSQNT*YCLPLVKSFSGFVK 142
           L+C  I ++ Q +  CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 225 LVCGFITVLSQNT*YCLPLVKSFSGFVK 142
           L+C  I ++ Q +  CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 79  VNVALQEVLKTALIHGGLVHGLHEXAKALDKRQAVLCVLAENCDEAAY 222
           V VAL +   T LIH   +H L++  K L     V C+L ++  +A Y
Sbjct: 16  VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 309 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLXD 416
           L K  K+ K +K+     + ++DF EETP  +   D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523


>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
           spermatogenesis protein15 protein.
          Length = 1219

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 265 WSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 408
           + RL        G V+AR+T +A  G   A    S  ++ R    W C
Sbjct: 11  FGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58


>Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical
           protein W01D2.5 protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 122 WIKAVFSTSCSATFTSMLLP 63
           W+ AVF  +CS +F +M +P
Sbjct: 87  WLIAVFPVACSCSFIAMCVP 106


>Z82062-4|CAB04888.1|  266|Caenorhabditis elegans Hypothetical
           protein W02A11.8 protein.
          Length = 266

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 306 GLCKIDKDGKARKIVGCSCVVIKDFGEET 392
           G C I+ D    K VG +   ++DFGEET
Sbjct: 80  GKCTIEADITIIKEVGDARAKLRDFGEET 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,608,641
Number of Sequences: 27780
Number of extensions: 211099
Number of successful extensions: 590
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)