Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1104
(439 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 85 2e-17
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 85 2e-17
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 85 2e-17
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 83 8e-17
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 83 8e-17
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 32 0.19
At5g39710.1 68418.m04808 pentatricopeptide (PPR) repeat-containi... 30 0.79
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH... 28 2.4
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH... 28 2.4
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 27 5.5
At5g49140.1 68418.m06082 disease resistance protein (TIR-NBS-LRR... 27 7.3
At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase / lon... 27 7.3
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 7.3
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg... 27 7.3
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR... 26 9.7
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR... 26 9.7
At2g01740.1 68415.m00103 pentatricopeptide (PPR) repeat-containi... 26 9.7
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 85.0 bits (201), Expect = 2e-17
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = +3
Query: 258 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLXDYLKSS 431
I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++ +L S+
Sbjct: 87 IKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/75 (45%), Positives = 52/75 (69%)
Frame = +1
Query: 70 NMDVNVALQEVLKTALIHGGLVHGLHEXAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 249
+MDV+ AL+ ++ + +GG+V GLHE AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 250 EHRFHWSRLTTTKSL 294
+H + + K+L
Sbjct: 84 DHSIKLLTVPSAKTL 98
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 85.0 bits (201), Expect = 2e-17
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = +3
Query: 258 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLXDYLKSS 431
I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++ +L S+
Sbjct: 87 IKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/75 (45%), Positives = 52/75 (69%)
Frame = +1
Query: 70 NMDVNVALQEVLKTALIHGGLVHGLHEXAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 249
+MDV+ AL+ ++ + +GG+V GLHE AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 250 EHRFHWSRLTTTKSL 294
+H + + K+L
Sbjct: 84 DHSIKLLTVPSAKTL 98
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 85.0 bits (201), Expect = 2e-17
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = +3
Query: 258 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLXDYLKSS 431
I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++ +L S+
Sbjct: 87 IKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/75 (45%), Positives = 52/75 (69%)
Frame = +1
Query: 70 NMDVNVALQEVLKTALIHGGLVHGLHEXAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 249
+MDV+ AL+ ++ + +GG+V GLHE AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 250 EHRFHWSRLTTTKSL 294
+H + + K+L
Sbjct: 84 DHSIKLLTVPSAKTL 98
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 83.0 bits (196), Expect = 8e-17
Identities = 34/58 (58%), Positives = 46/58 (79%)
Frame = +3
Query: 255 QIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLXDYLKS 428
++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET AL ++ ++ S
Sbjct: 86 EVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143
Score = 72.1 bits (169), Expect = 1e-13
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Frame = +1
Query: 22 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEXAKALDKRQAVLCVLA 198
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 199 ENCDEAAYKKLVQALCNEHRFHWSRLTTTKSL 294
E+C++ Y KLV+ALC +H + + K+L
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTL 98
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 83.0 bits (196), Expect = 8e-17
Identities = 34/58 (58%), Positives = 46/58 (79%)
Frame = +3
Query: 255 QIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLXDYLKS 428
++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET AL ++ ++ S
Sbjct: 86 EVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143
Score = 72.1 bits (169), Expect = 1e-13
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Frame = +1
Query: 22 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEXAKALDKRQAVLCVLA 198
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 199 ENCDEAAYKKLVQALCNEHRFHWSRLTTTKSL 294
E+C++ Y KLV+ALC +H + + K+L
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTL 98
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 163 LDKRQAVLCVLAENCDEAAYKKLVQALCNEHRFHWSRLTTTKSLENGLVSAR 318
L RQA++C L+E+C ++Y K VQ NE ++ + +SL + AR
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINEVGYYVDIDESDRSLRKKVADAR 404
>At5g39710.1 68418.m04808 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 747
Score = 29.9 bits (64), Expect = 0.79
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 208 DEAAYKKLVQALCNEHRFHWSRLTTTKSLENGLVSARLT 324
DE Y L++ C E FH + + + L +GL + +T
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVIT 347
>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 742
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 282 CCQP*PVESVFVAQSLNKFLVCGFIT 205
C + P+E ++ +L LVCGFIT
Sbjct: 186 CHEGEPIEETYICATLAVVLVCGFIT 211
>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 810
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 282 CCQP*PVESVFVAQSLNKFLVCGFIT 205
C + P+E ++ +L LVCGFIT
Sbjct: 254 CHEGEPIEETYICATLAVVLVCGFIT 279
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 246 QRTQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVG 353
+R+ P+++ NKK E KID+ GK ++I G
Sbjct: 1411 ERSNAPVIEKQGNKKNAEEEMQDKIDRRGKNQEIKG 1446
>At5g49140.1 68418.m06082 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 980
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 163 LDKRQAVLCVLAENCDEAAYKKLVQALCNEHRFHWSRLTTTKSLE 297
L K ++ + E C A +L ++ N HR W RLT + LE
Sbjct: 650 LSKAISLETLCLEGCQSLA--ELPSSVLNLHRLKWLRLTMCEKLE 692
>At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to
acyl-CoA synthetase (MF7P) from Brassica napus
[gi:1617270]
Length = 666
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 98 SCSATFTSMLLPDKMGLVGT 39
SC+ TF S LPD++G++GT
Sbjct: 423 SCAGTFVS--LPDELGMLGT 440
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 282 NKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 389
NKK L K+ KD KA K+ GCS + + + E
Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHE 481
>At1g78700.1 68414.m09173 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 325
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 125 PWIKAVFSTSCSATFTSMLLPDKMGLVGTSTS 30
PW+K + +TS S+ +S LP+ + + G S S
Sbjct: 134 PWLKHLSTTSSSSASSSSRLPNYLYIPGGSIS 165
>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1298
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 55 ILSGNNMDVNVALQEVLKTALIH 123
+L+ + +DVN+AL+ ++ +LIH
Sbjct: 495 LLADSGLDVNIALENLVDKSLIH 517
>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1353
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 55 ILSGNNMDVNVALQEVLKTALIH 123
+L+ + +DVN+AL+ ++ +LIH
Sbjct: 456 LLADSGLDVNIALENLVDKSLIH 478
>At2g01740.1 68415.m00103 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 559
Score = 26.2 bits (55), Expect = 9.7
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Frame = +1
Query: 154 AKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHRFHWSRLTTTKSLENGLV------SA 315
AK +A++ E ++ Y L+ ALC E F +K E GLV ++
Sbjct: 384 AKNGQLHEAIVYFCIEKANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTS 443
Query: 316 RLTRMARQGKLSAAPVLSSKISARKLQRWMCSXTT 420
+ + +QG L A L +++ L + + TT
Sbjct: 444 WIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTT 478
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,098,158
Number of Sequences: 28952
Number of extensions: 194929
Number of successful extensions: 597
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -