Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1103
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    75   2e-15
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    50   6e-08
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    41   5e-05
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    39   2e-04
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   1.1  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   1.5  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   1.5  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   1.9  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   3.4  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    24   4.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    24   4.5  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    24   5.9  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    23   7.9  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 75.4 bits (177), Expect = 2e-15
 Identities = 31/45 (68%), Positives = 36/45 (80%)
 Frame = +2

Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 253
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D+ G Y G S+ Q E
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHE 45



 Score = 38.7 bits (86), Expect = 2e-04
 Identities = 15/18 (83%), Positives = 18/18 (100%)
 Frame = +1

Query: 256 INVYYNEASGGKYVPRAV 309
           +NVY+NEA+GGKYVPRAV
Sbjct: 47  LNVYFNEAAGGKYVPRAV 64


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 50.4 bits (115), Expect = 6e-08
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +2

Query: 122 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 220
           REI+ +QAGQCGNQIG++FW+ +  EHGI   G
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDG 35


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 40.7 bits (91), Expect = 5e-05
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +2

Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 220
           MREI+ I  GQ G QIG   WE+   EHGI   G
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34



 Score = 23.8 bits (49), Expect = 5.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 259 NVYYNEASGGKYVPRAV 309
           + +++E   GKYVPR++
Sbjct: 50  STFFSETGQGKYVPRSI 66


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 38.7 bits (86), Expect = 2e-04
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 244
           MRE++ +  GQ G QIG   WE+   EHGI   G  + +S++
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEV 42


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 187 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 83
           +F E+   + P   +LD+DD  +     + P E+N
Sbjct: 36  FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 84  FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 242
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 84  FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 242
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 144 AWMWTISLMIALKIWNPPNRI 82
           AW+W ++LM+    +  PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +2

Query: 98  FQIFSAIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSD 241
           F + S I      I    C  +    +W+V+    G+  TGA S  SD
Sbjct: 807 FSVLSLICPSRTLIIDKACVEKTWPYWWDVLHQSFGVKLTGATSVASD 854


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 159 FPH*PAWMWTISLMIALKIWNPPNR 85
           FP     MWTI L++ L +W+  ++
Sbjct: 25  FPLVSFLMWTIGLIVLLGLWSTQDK 49


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 202 VLVRDYFPELCSDLIPALTRLDVDDFPHDCT 110
           +   +Y P   S+ +  + RLDVD F H  T
Sbjct: 625 IAAEEYSPNWESEELRLVNRLDVDSFLHPKT 655


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -1

Query: 123 LMIALKIWNPPN--RILNKHFREFDHVKK 43
           L I    W PP       KH REF+ +KK
Sbjct: 132 LSIGRPSWLPPKSKEEEKKHMREFEQIKK 160


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 185 VISDEHGIDATGAYSGDSDL 244
           V SDE    A+G YSGD +L
Sbjct: 234 VYSDEKFFYASGRYSGDVEL 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,308,270
Number of Sequences: 5004
Number of extensions: 24176
Number of successful extensions: 76
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)