Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1103
(309 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 97 2e-21
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 91 1e-19
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 91 1e-19
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 88 1e-18
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 85 7e-18
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 84 2e-17
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 76 6e-15
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 76 6e-15
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 43 5e-05
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 43 5e-05
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 41 2e-04
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 41 2e-04
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 41 2e-04
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 41 2e-04
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 40 3e-04
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 40 3e-04
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 39 6e-04
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 39 8e-04
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 39 8e-04
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 39 8e-04
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 39 8e-04
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 38 0.001
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 38 0.001
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 37 0.002
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 37 0.002
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 29 0.87
AL022271-1|CAA18349.1| 919|Caenorhabditis elegans Hypothetical ... 27 2.0
AF003137-9|AAB93646.3| 883|Caenorhabditis elegans Hypothetical ... 27 3.5
Z77133-3|CAB00868.2| 149|Caenorhabditis elegans Hypothetical pr... 26 4.7
AL110477-20|CAB76740.3| 728|Caenorhabditis elegans Hypothetical... 26 4.7
Z83230-5|CAB05745.1| 304|Caenorhabditis elegans Hypothetical pr... 26 6.2
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass... 26 6.2
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 25 8.1
AF016421-7|AAO12430.1| 413|Caenorhabditis elegans Hypothetical ... 25 8.1
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 97.1 bits (231), Expect = 2e-21
Identities = 43/45 (95%), Positives = 44/45 (97%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 253
MREIVHIQAGQCGNQIGAKFWEVISDEHGID TGAY+GDSDLQLE
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQLE 45
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 256 INVYYNEASGGKYVPRA 306
INVYYNEASGGKYVPRA
Sbjct: 47 INVYYNEASGGKYVPRA 63
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 91.1 bits (216), Expect = 1e-19
Identities = 40/45 (88%), Positives = 42/45 (93%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 253
MREIVHIQAGQCGNQIG+KFWEVISDEHGID +G Y GDSDLQLE
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLE 45
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +1
Query: 256 INVYYNEASGGKYVPRAV 309
INVYYNEA KYVPRAV
Sbjct: 47 INVYYNEAGSNKYVPRAV 64
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 91.1 bits (216), Expect = 1e-19
Identities = 40/45 (88%), Positives = 42/45 (93%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 253
MREIVHIQAGQCGNQIG+KFWEVISDEHGID +G Y GDSDLQLE
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLE 45
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +1
Query: 256 INVYYNEASGGKYVPRAV 309
INVYYNEA KYVPRAV
Sbjct: 47 INVYYNEAGSNKYVPRAV 64
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 88.2 bits (209), Expect = 1e-18
Identities = 38/45 (84%), Positives = 40/45 (88%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 253
MREIVH+QAGQCGNQIGAKFWEVISDEHGI G Y G+SDLQLE
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDLQLE 45
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +1
Query: 256 INVYYNEASGGKYVPRAV 309
INVYYNEA+GGKYVPRAV
Sbjct: 47 INVYYNEANGGKYVPRAV 64
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 85.4 bits (202), Expect = 7e-18
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 253
MREIVH+QAGQCGNQIG+KFWEVISDEHGI G + G+SDLQLE
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQLE 45
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1
Query: 256 INVYYNEASGGKYVPRAV 309
I+VYYNEA+ GKYVPRAV
Sbjct: 47 IDVYYNEANNGKYVPRAV 64
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 84.2 bits (199), Expect = 2e-17
Identities = 35/45 (77%), Positives = 40/45 (88%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 253
MREIVH+QAGQCGNQIG+KFWEVISDEHGI G + G++DLQLE
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLE 45
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1
Query: 256 INVYYNEASGGKYVPRAV 309
I+VYYNEA+ GKYVPRAV
Sbjct: 47 IDVYYNEANNGKYVPRAV 64
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 75.8 bits (178), Expect = 6e-15
Identities = 31/56 (55%), Positives = 41/56 (73%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLEPSMSTITKLQG 286
M+EI+++Q GQCGNQIGAKFWE IS+EHG+ G Y GD+ QLE S +++G
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEG 56
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 256 INVYYNEASGGKYVPRAV 309
I YY E G KYVPRA+
Sbjct: 47 ITSYYKEMEGRKYVPRAI 64
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 75.8 bits (178), Expect = 6e-15
Identities = 31/56 (55%), Positives = 41/56 (73%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLEPSMSTITKLQG 286
M+EI+++Q GQCGNQIGAKFWE IS+EHG+ G Y GD+ QLE S +++G
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEG 56
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 256 INVYYNEASGGKYVPRAV 309
I YY E G KYVPRA+
Sbjct: 47 ITSYYKEMEGRKYVPRAI 64
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 42.7 bits (96), Expect = 5e-05
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 128 IVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 244
++ + GQCGNQ+ FW+ + DEHGI+ G + + D+
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM 45
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 42.7 bits (96), Expect = 5e-05
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 128 IVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 244
++ + GQCGNQ+ FW+ + DEHGI+ G + + D+
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM 45
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 253
MREIV I GQ G QIG WE+ EHGI G D+ +E
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVE 45
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 259 NVYYNEASGGKYVPRAV 309
N +++E GK+VPRA+
Sbjct: 50 NTFFSETPSGKHVPRAI 66
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 244
MRE++ I GQ G QIG WE+ EHGI G D L
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSL 42
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 244
MRE++ I GQ G QIG WE+ EHGI G D L
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSL 42
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 244
MRE++ I GQ G QIG WE+ EHGI G D L
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSL 42
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 235
MRE++ I GQ G QIG WE+ EHGI G D
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSD 39
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 235
MRE++ I GQ G QIG WE+ EHGI G D
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSD 39
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +2
Query: 122 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 244
RE++ I GQ G QIG WE+ EHGI G D L
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSL 41
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 220
MRE++ I GQ G QIG WE+ EHGI G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDG 34
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 220
MRE++ I GQ G QIG WE+ EHGI G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDG 34
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 220
MRE++ I GQ G QIG WE+ EHGI G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDG 34
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 220
MRE++ I GQ G QIG WE+ EHGI G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDG 34
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 122 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 235
RE++ I GQ G QIG WE+ EHGI G + D
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVED 45
Score = 28.7 bits (61), Expect = 0.87
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 253 TINVYYNEASGGKYVPRAV 309
TIN ++ E +GGK+VPR +
Sbjct: 54 TINTFFAETAGGKHVPRCL 72
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +2
Query: 122 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 220
RE V I GQ G QIG WE+ EHG+D G
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAG 38
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 119 MREIVHIQAGQCGNQIGAKFWEVISDEHGI 208
MRE++ I GQ G QIG WE+ EHGI
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGI 30
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 122 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 253
RE++ I GQ G Q+G WE+ EHGI G + + L ++
Sbjct: 7 REVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVD 50
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 253 TINVYYNEASGGKYVPRAV 309
+ N +++E GK+VPRA+
Sbjct: 53 SFNTFFSETMAGKHVPRAI 71
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 28.7 bits (61), Expect = 0.87
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 253 TINVYYNEASGGKYVPRAV 309
TIN ++ E +GGK+VPR +
Sbjct: 26 TINTFFAETAGGKHVPRCL 44
>AL022271-1|CAA18349.1| 919|Caenorhabditis elegans Hypothetical
protein F32F2.1 protein.
Length = 919
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 75 YLIFDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPTCSL 251
Y I D SK+++Q ++ + +R + S +TP VL A T C++
Sbjct: 64 YRILDQNESKYILQQQSAAAIEEKKGTLLRRKSSKKLIEPLPMIITPPVLMARTQCCAV 122
>AF003137-9|AAB93646.3| 883|Caenorhabditis elegans Hypothetical
protein C27A12.9 protein.
Length = 883
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 164 IGAKFWEVISDEHGIDATGAYSGDSDLQLEPSMSTITK 277
IG + SD+HG+ +TG + G+S+ ++ + +K
Sbjct: 245 IGQTIETMKSDDHGMTSTGDHGGESENEIRAGILVHSK 282
>Z77133-3|CAB00868.2| 149|Caenorhabditis elegans Hypothetical
protein K03A11.5 protein.
Length = 149
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 130 DFPHDCTKNLEPPESN 83
D+P+D KNL P ESN
Sbjct: 42 DYPYDICKNLYPRESN 57
>AL110477-20|CAB76740.3| 728|Caenorhabditis elegans Hypothetical
protein Y113G7B.18 protein.
Length = 728
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 208 NAVLVRDYFPELCSDLIPALTRLDV 134
N +L+RD F +C+D I RL +
Sbjct: 396 NTLLLRDVFKTICTDAIKLRNRLSI 420
>Z83230-5|CAB05745.1| 304|Caenorhabditis elegans Hypothetical
protein F56A8.5 protein.
Length = 304
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 17 KSLHFYINFFFT*SNSRKCLFNIRF 91
K+L+ Y+ FF N+ +C+ ++F
Sbjct: 40 KTLNLYVEFFSVEINNNRCVIRLKF 64
>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
assigned gene nameprotein 177 protein.
Length = 1667
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 5 NSCRKSLHFYINFFFT*SNSRKCLFNIRFGGFQIF 109
NS + L FY+ F N +KC F F F +F
Sbjct: 449 NSYLELLIFYVPLFIGLVNLKKCTFLSEFDKFYLF 483
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 5 NSCRKSLHFYINFFFT*SNSRKCLFNIRFGGFQIFS 112
NSC K L F INFF C+F GF +++
Sbjct: 5 NSCIKLLFFVINFFI-------CIFGALICGFSLWA 33
>AF016421-7|AAO12430.1| 413|Caenorhabditis elegans Hypothetical
protein F44E7.5a protein.
Length = 413
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 187 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPES 86
++P+L + L +D++ F H TK + P S
Sbjct: 180 FWPKLKGSKVETLDLMDIESFHHTSTKEFKLPLS 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,497,628
Number of Sequences: 27780
Number of extensions: 143732
Number of successful extensions: 443
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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