Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1102
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    35   0.023
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771...    30   0.87 
03_05_0431 + 24221881-24224586                                         27   6.1  

>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 35.1 bits (77), Expect = 0.023
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +1

Query: 205 SEEDWHKTRNSF*SIGTRSPGRGELYNGYSGREHRTSHPLEAAADRR-NPQVRRXGPH-D 378
           S ++W   R SF     R  GRG ++  Y GR+ R   P    A RR  P      PH  
Sbjct: 120 SMQEWSSERCSFVQEALRGSGRGHIWAFYRGRQRRLGPPPPLPARRRLGPPPPVLVPHTP 179

Query: 379 VSAQSFCSARLR 414
            SA +    RLR
Sbjct: 180 ASAAAASHPRLR 191


>03_05_0586 -
           25875703-25876332,25876426-25876713,25877064-25877194,
           25877299-25877812
          Length = 520

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
 Frame = +2

Query: 173 HGPHQPRPSFGQRKTG------------TRRGILFRASERDHQDAANSIMGIVVENI 307
           HGPH P P FG+   G             R G L+ A  R   D A   + + V NI
Sbjct: 253 HGPHWPLPPFGESSRGPFNILEQRPRFANRHGRLYEADARSFHDLAEHDIRVAVVNI 309


>03_05_0431 + 24221881-24224586
          Length = 901

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 262 VISFRCSKKNSSSCASLPLTEARTRLMRSMYF 167
           V  F CSK  S  C S  L++ RT+  + M F
Sbjct: 388 VCQFDCSKCASDECVSFCLSQKRTKNRKFMAF 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,770,438
Number of Sequences: 37544
Number of extensions: 160722
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)