Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1102
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)                   31   0.29 
SB_39810| Best HMM Match : Pam16 (HMM E-Value=8.3)                     30   0.89 
SB_15988| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)     27   6.3  
SB_48429| Best HMM Match : PI3_PI4_kinase (HMM E-Value=7.7e-09)        27   6.3  
SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  

>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 1693

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 152 RLLRGEVHGPHQPRPSFGQRKT---GTRRGILFRASERDHQDAANSIMGIVVENIE 310
           R  RGEVH P +P  + G R+T   G  RG   R   R+  DA     GI  +N+E
Sbjct: 627 RCPRGEVHHPARPFSADGPRRTVPKGALRGDALRDHARNGSDATKLSYGI--KNLE 680


>SB_39810| Best HMM Match : Pam16 (HMM E-Value=8.3)
          Length = 177

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 161 RGEVHGPHQPRPSFGQRKTGTRRGILFRASERDH 262
           RGEVH P +P  + G R+T   +G L  A+ RDH
Sbjct: 141 RGEVHHPARPFSADGPRRT-VPKGALRGAALRDH 173


>SB_15988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 161 RGEVHGPHQPRPSFGQRKTGTRRGILFRASERDH 262
           RGEVH P +P  + G R+    +G L  A+ RDH
Sbjct: 229 RGEVHHPARPFSADGPRR-AIHKGALRGAALRDH 261


>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
          Length = 2022

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 292  SGREHRTSHPLEAAADRRNPQVRRXGPHD 378
            SG+   TSHPL +   + + Q++R   HD
Sbjct: 1862 SGQVCNTSHPLHSLQAKFDEQIKRQADHD 1890


>SB_48429| Best HMM Match : PI3_PI4_kinase (HMM E-Value=7.7e-09)
          Length = 1423

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 292 SGREHRTSHPLEAAADRRNPQVRRXGPHD 378
           SG+   TSHPL +   + + Q++R   HD
Sbjct: 250 SGQVCNTSHPLHSLQAKFDEQIKRQADHD 278


>SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 319 DVRFDVLDHYTHYRVRRVLVISFRCSKKNS 230
           D R ++       +VRR+++ +F C+K N+
Sbjct: 373 DFRINIAKEVKFAKVRRIIIDNFHCNKSNN 402


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,788,358
Number of Sequences: 59808
Number of extensions: 168927
Number of successful extensions: 455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)