Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1102
(419 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80954-3|AAK77630.1| 603|Caenorhabditis elegans Defective in ge... 27 4.1
U80954-2|AAK77629.1| 977|Caenorhabditis elegans Defective in ge... 27 4.1
U55363-1|AAK71420.1| 340|Caenorhabditis elegans Serpentine rece... 27 4.1
AC024843-10|AAF60845.2| 526|Caenorhabditis elegans Hypothetical... 27 4.1
U39651-6|AAL11483.1| 286|Caenorhabditis elegans Temporarily ass... 27 5.5
U39651-5|AAL11482.2| 395|Caenorhabditis elegans Temporarily ass... 27 5.5
AL021492-12|CAJ76949.1| 622|Caenorhabditis elegans Hypothetical... 27 7.2
AL021492-11|CAA16378.1| 684|Caenorhabditis elegans Hypothetical... 27 7.2
AF077531-6|AAC64616.2| 408|Caenorhabditis elegans Gex interacti... 27 7.2
Z22176-3|CAA80132.1| 305|Caenorhabditis elegans Hypothetical pr... 26 9.5
U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop heli... 26 9.5
U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop heli... 26 9.5
M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD, alterna... 26 9.5
M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein. 26 9.5
AF039046-13|AAB94213.1| 551|Caenorhabditis elegans Hypothetical... 26 9.5
>U80954-3|AAK77630.1| 603|Caenorhabditis elegans Defective in germ
line developmentprotein 3, isoform b protein.
Length = 603
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 217 WHKTRNSF*SIGTRSPGRGELYNGYSGREHRTS 315
WH + + P RGEL +G +GR HR+S
Sbjct: 439 WHHSLPANFLKNFNMPCRGELSDGSNGRRHRSS 471
>U80954-2|AAK77629.1| 977|Caenorhabditis elegans Defective in germ
line developmentprotein 3, isoform a protein.
Length = 977
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 217 WHKTRNSF*SIGTRSPGRGELYNGYSGREHRTS 315
WH + + P RGEL +G +GR HR+S
Sbjct: 439 WHHSLPANFLKNFNMPCRGELSDGSNGRRHRSS 471
>U55363-1|AAK71420.1| 340|Caenorhabditis elegans Serpentine
receptor, class h protein30 protein.
Length = 340
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 334 LRLPVDVRFDVLDHYTHYRVRRVLVISFR 248
+ L V + +L H T YR++ ++ +SFR
Sbjct: 104 MMLSVQINLGILTHITFYRMKIIIPMSFR 132
>AC024843-10|AAF60845.2| 526|Caenorhabditis elegans Hypothetical
protein Y61A9LA.1 protein.
Length = 526
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 270 ASW*SRSDALKRIP-RLVPVFL*PKLGR 190
A+W S + L R+P LVPVFL +LGR
Sbjct: 356 ATWLSFATGLLRLPFTLVPVFLVDRLGR 383
>U39651-6|AAL11483.1| 286|Caenorhabditis elegans Temporarily
assigned gene nameprotein 22, isoform b protein.
Length = 286
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 218 GTRRGILFRASERDHQDAANSIMGIVVENIEPHIHWKPQLIDGILKYGD 364
G L R SE + D + S+ GI E + H+K Q +DG+LK G+
Sbjct: 209 GREGEFLVRDSESNPGDLSISMRGI-----ERNKHFKVQNVDGLLKIGN 252
>U39651-5|AAL11482.2| 395|Caenorhabditis elegans Temporarily
assigned gene nameprotein 22, isoform a protein.
Length = 395
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 218 GTRRGILFRASERDHQDAANSIMGIVVENIEPHIHWKPQLIDGILKYGD 364
G L R SE + D + S+ GI E + H+K Q +DG+LK G+
Sbjct: 318 GREGEFLVRDSESNPGDLSISMRGI-----ERNKHFKVQNVDGLLKIGN 361
>AL021492-12|CAJ76949.1| 622|Caenorhabditis elegans Hypothetical
protein Y45F10D.3b protein.
Length = 622
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 212 KTGTRRGILFRASERDHQDAANSIMGIVVENIEPHIHWKPQLIDGI 349
+T R G++ R + QDA I+ + + E + +W P L+D I
Sbjct: 225 RTKKREGLI-RGRQLGAQDATGEILIFLDAHSEANYNWLPPLLDPI 269
>AL021492-11|CAA16378.1| 684|Caenorhabditis elegans Hypothetical
protein Y45F10D.3a protein.
Length = 684
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 212 KTGTRRGILFRASERDHQDAANSIMGIVVENIEPHIHWKPQLIDGI 349
+T R G++ R + QDA I+ + + E + +W P L+D I
Sbjct: 287 RTKKREGLI-RGRQLGAQDATGEILIFLDAHSEANYNWLPPLLDPI 331
>AF077531-6|AAC64616.2| 408|Caenorhabditis elegans Gex interacting
protein protein10, isoform a protein.
Length = 408
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 202 RSEEDWHKTRNSF*SIGTRSPGRGELYNGYSGREHRTSHPLEAAADRRNPQV 357
R + DW S+ S R+P E G+ R S+P+ + RN V
Sbjct: 336 RPDTDWRNNNTSYLSAALRTPKFWEQRFENIGKHVRDSNPISLESINRNRPV 387
>Z22176-3|CAA80132.1| 305|Caenorhabditis elegans Hypothetical
protein ZK1098.4 protein.
Length = 305
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 153 DSCVGKYMDRISRVLASVRG 212
DSCVG M+RI VL G
Sbjct: 184 DSCVGYVMERIQAVLVGAEG 203
>U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop helix
protein 1, isoforma protein.
Length = 320
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 174 MDRISRVLASVRGRLAQDEEFFLEHRNEI 260
+DR+SR++AS+ A +E L+ N++
Sbjct: 282 LDRLSRIVASIPNEEAMTDEQLLQPANDV 310
>U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop helix
protein 1, isoformb protein.
Length = 324
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 174 MDRISRVLASVRGRLAQDEEFFLEHRNEI 260
+DR+SR++AS+ A +E L+ N++
Sbjct: 286 LDRLSRIVASIPNEEAMTDEQLLQPANDV 314
>M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD,
alternatively spliced productprotein.
Length = 320
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 174 MDRISRVLASVRGRLAQDEEFFLEHRNEI 260
+DR+SR++AS+ A +E L+ N++
Sbjct: 282 LDRLSRIVASIPNEEAMTDEQLLQPANDV 310
>M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein.
Length = 324
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 174 MDRISRVLASVRGRLAQDEEFFLEHRNEI 260
+DR+SR++AS+ A +E L+ N++
Sbjct: 286 LDRLSRIVASIPNEEAMTDEQLLQPANDV 314
>AF039046-13|AAB94213.1| 551|Caenorhabditis elegans Hypothetical
protein R09B5.4 protein.
Length = 551
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 266 DAANSIMGIVVENIEPHIHWKPQLIDGI 349
D +S G N++PH+ WK DG+
Sbjct: 401 DMVHSFDGNNATNLDPHVDWKHFSSDGV 428
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,799,483
Number of Sequences: 27780
Number of extensions: 121974
Number of successful extensions: 345
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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